miRNA display CGI


Results 21 - 40 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27561 3' -55.8 NC_005882.1 + 17271 0.67 0.498618
Target:  5'- uGcCUGAaGCGguCGACCUCGGcuACUGCa -3'
miRNA:   3'- gC-GACUaCGC--GCUGGAGCUucUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 26768 0.68 0.487082
Target:  5'- gGCcggGAUGgGCGGCCgCGAacugcgcGGugCGCu -3'
miRNA:   3'- gCGa--CUACgCGCUGGaGCU-------UCugGCG- -5'
27561 3' -55.8 NC_005882.1 + 12066 0.68 0.467459
Target:  5'- cCGCUGgcGCGCGgacGCCgucagCGucguuGGugCGCg -3'
miRNA:   3'- -GCGACuaCGCGC---UGGa----GCu----UCugGCG- -5'
27561 3' -55.8 NC_005882.1 + 31392 0.68 0.467459
Target:  5'- gGCUGccgGCGCaGCCcgCGAAGACgaCGCu -3'
miRNA:   3'- gCGACua-CGCGcUGGa-GCUUCUG--GCG- -5'
27561 3' -55.8 NC_005882.1 + 25495 0.68 0.467459
Target:  5'- uCGCcGAgcUGCGCGGCCaguacGACCGCc -3'
miRNA:   3'- -GCGaCU--ACGCGCUGGagcuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 29495 0.68 0.446256
Target:  5'- aGCUGAUcuucagcgaacucGC-CGACCUgCGAGGAUCGg -3'
miRNA:   3'- gCGACUA-------------CGcGCUGGA-GCUUCUGGCg -5'
27561 3' -55.8 NC_005882.1 + 30510 0.68 0.437335
Target:  5'- aGCgugugGGUcGCGCGAUcguaCUCGAGcACCGCg -3'
miRNA:   3'- gCGa----CUA-CGCGCUG----GAGCUUcUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 12366 0.69 0.427543
Target:  5'- gCGCUGAUcGCGauaGACCcagCccAGGCCGCc -3'
miRNA:   3'- -GCGACUA-CGCg--CUGGa--GcuUCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 13774 0.69 0.417882
Target:  5'- aGCaGcgGCGUGcaacGCCUgcCGAAGGCCGUg -3'
miRNA:   3'- gCGaCuaCGCGC----UGGA--GCUUCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 27661 0.69 0.417882
Target:  5'- aCGCcGcgGcCGCGGCCUgcgucgccaugcCGgcGGCCGCg -3'
miRNA:   3'- -GCGaCuaC-GCGCUGGA------------GCuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 26114 0.69 0.408356
Target:  5'- gCGCUGAcGCagaucaucGCcaGCCUCGAAGucgGCCGCg -3'
miRNA:   3'- -GCGACUaCG--------CGc-UGGAGCUUC---UGGCG- -5'
27561 3' -55.8 NC_005882.1 + 27578 0.69 0.398966
Target:  5'- cCGCgc--GCGCGGCCgccggcauggCGAcgcAGGCCGCg -3'
miRNA:   3'- -GCGacuaCGCGCUGGa---------GCU---UCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 18735 0.69 0.398966
Target:  5'- gCGCUGuggcuaucguUGCGCG-CCUCGGgugguccggAGGCgCGCa -3'
miRNA:   3'- -GCGACu---------ACGCGCuGGAGCU---------UCUG-GCG- -5'
27561 3' -55.8 NC_005882.1 + 19285 0.69 0.398966
Target:  5'- uCGCUGAaauugacgucGCGCaGGcCCUUGAGGGCCGg -3'
miRNA:   3'- -GCGACUa---------CGCG-CU-GGAGCUUCUGGCg -5'
27561 3' -55.8 NC_005882.1 + 17777 0.7 0.354146
Target:  5'- gGCUcggGCGCGugCggcugUCGAGGAUCGCc -3'
miRNA:   3'- gCGAcuaCGCGCugG-----AGCUUCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 13506 0.7 0.354146
Target:  5'- gCGCUGuacaacGCGCGGCC-CGAGGAagUCGUc -3'
miRNA:   3'- -GCGACua----CGCGCUGGaGCUUCU--GGCG- -5'
27561 3' -55.8 NC_005882.1 + 21362 0.7 0.337241
Target:  5'- cCGCagGAUGCGgaUGACgUCGccGGCCGCc -3'
miRNA:   3'- -GCGa-CUACGC--GCUGgAGCuuCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 28334 0.7 0.337241
Target:  5'- aCGCUGGagaccgccUGCGCGGCCgccggCGGcaccuuGGGCUGUa -3'
miRNA:   3'- -GCGACU--------ACGCGCUGGa----GCU------UCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 126 0.71 0.329011
Target:  5'- -uCUGggGCaaGGCCcgCGAGGGCCGCg -3'
miRNA:   3'- gcGACuaCGcgCUGGa-GCUUCUGGCG- -5'
27561 3' -55.8 NC_005882.1 + 22475 0.71 0.320931
Target:  5'- aCGCUGGggcGCGCGGgCUUGGucGACgGCg -3'
miRNA:   3'- -GCGACUa--CGCGCUgGAGCUu-CUGgCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.