miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27563 5' -56.5 NC_005882.1 + 8651 0.66 0.522479
Target:  5'- aGGGCuGcGUCGACGGCGuacgcuuuucgcaGgCGCUGCGu -3'
miRNA:   3'- gCUCGcC-CAGUUGUCGU-------------UgGCGACGU- -5'
27563 5' -56.5 NC_005882.1 + 7707 0.66 0.512735
Target:  5'- gCGGGCGGcGUCGaggcuacggaggAUGGCGACgGCgugGCGc -3'
miRNA:   3'- -GCUCGCC-CAGU------------UGUCGUUGgCGa--CGU- -5'
27563 5' -56.5 NC_005882.1 + 17038 0.66 0.491361
Target:  5'- -cGGCGGacacCGGCAGCGGCCGCUcGUc -3'
miRNA:   3'- gcUCGCCca--GUUGUCGUUGGCGA-CGu -5'
27563 5' -56.5 NC_005882.1 + 6765 0.66 0.490303
Target:  5'- uCGAgGCGGaGUCGguuauucGCGGCAACCuGCgUGCc -3'
miRNA:   3'- -GCU-CGCC-CAGU-------UGUCGUUGG-CG-ACGu -5'
27563 5' -56.5 NC_005882.1 + 27853 0.66 0.48083
Target:  5'- gCGAGCaGGUCGucgAGCAugCGCUcCAg -3'
miRNA:   3'- -GCUCGcCCAGUug-UCGUugGCGAcGU- -5'
27563 5' -56.5 NC_005882.1 + 16466 0.67 0.470409
Target:  5'- cCGAuGCuGGUCGGCaAGCAuCCGC-GCAg -3'
miRNA:   3'- -GCU-CGcCCAGUUG-UCGUuGGCGaCGU- -5'
27563 5' -56.5 NC_005882.1 + 22089 0.67 0.460105
Target:  5'- uCGAGCacGUCGAUGGCAccGCCGCgGCc -3'
miRNA:   3'- -GCUCGccCAGUUGUCGU--UGGCGaCGu -5'
27563 5' -56.5 NC_005882.1 + 25708 0.67 0.449921
Target:  5'- aCGGGCGcGGcCGugGCAGCcGCCGUcGCGu -3'
miRNA:   3'- -GCUCGC-CCaGU--UGUCGuUGGCGaCGU- -5'
27563 5' -56.5 NC_005882.1 + 29707 0.67 0.430921
Target:  5'- gCGGGCaagcggaaacaguccGGUCAgucgacgaGCGGCGACaCGCUGCGg -3'
miRNA:   3'- -GCUCGc--------------CCAGU--------UGUCGUUG-GCGACGU- -5'
27563 5' -56.5 NC_005882.1 + 22463 0.67 0.420138
Target:  5'- gCGGGCuuGGUCGACGGC-GCUGCgGCc -3'
miRNA:   3'- -GCUCGc-CCAGUUGUCGuUGGCGaCGu -5'
27563 5' -56.5 NC_005882.1 + 15277 0.67 0.420138
Target:  5'- aCGAGCGGGcgUCGACcgggAGCG-CCGUgaGCAg -3'
miRNA:   3'- -GCUCGCCC--AGUUG----UCGUuGGCGa-CGU- -5'
27563 5' -56.5 NC_005882.1 + 177 0.68 0.410479
Target:  5'- gGAGacaGuGGUCAACGGUggAACCGCguaGCGg -3'
miRNA:   3'- gCUCg--C-CCAGUUGUCG--UUGGCGa--CGU- -5'
27563 5' -56.5 NC_005882.1 + 27557 0.68 0.410479
Target:  5'- uCGGGCGcucGUCGGCGGUcGCCGCgcgcGCGg -3'
miRNA:   3'- -GCUCGCc--CAGUUGUCGuUGGCGa---CGU- -5'
27563 5' -56.5 NC_005882.1 + 3707 0.69 0.346884
Target:  5'- uCGAGCGGGgccagcUCGACcauuucGC-AUCGCUGCAc -3'
miRNA:   3'- -GCUCGCCC------AGUUGu-----CGuUGGCGACGU- -5'
27563 5' -56.5 NC_005882.1 + 12237 0.7 0.30596
Target:  5'- gGAGCGcaUC-ACGGCGGCCGgUGCAu -3'
miRNA:   3'- gCUCGCccAGuUGUCGUUGGCgACGU- -5'
27563 5' -56.5 NC_005882.1 + 12377 0.7 0.283234
Target:  5'- uCGAGCGGuUCAACGccggccggcacGCGGCCGCUuuccGCGa -3'
miRNA:   3'- -GCUCGCCcAGUUGU-----------CGUUGGCGA----CGU- -5'
27563 5' -56.5 NC_005882.1 + 31371 0.7 0.283234
Target:  5'- gCGAGCuGGUCGGCGugacGCGGCUGCcgGCGc -3'
miRNA:   3'- -GCUCGcCCAGUUGU----CGUUGGCGa-CGU- -5'
27563 5' -56.5 NC_005882.1 + 30840 0.7 0.283234
Target:  5'- aGAGCuGGGUCAuGCGGCcauguuGCCGC-GCGa -3'
miRNA:   3'- gCUCG-CCCAGU-UGUCGu-----UGGCGaCGU- -5'
27563 5' -56.5 NC_005882.1 + 35230 0.7 0.283234
Target:  5'- aCGAGaaGGUCAucguucCAGCGcuuGCCGUUGCAa -3'
miRNA:   3'- -GCUCgcCCAGUu-----GUCGU---UGGCGACGU- -5'
27563 5' -56.5 NC_005882.1 + 27163 0.71 0.241826
Target:  5'- gGAcGCGGGcCAGCAGCAucCCGCccuggGCGa -3'
miRNA:   3'- gCU-CGCCCaGUUGUCGUu-GGCGa----CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.