miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27564 5' -55.2 NC_005882.1 + 32126 0.66 0.652689
Target:  5'- cCGGCcUGGGGCGCGAUaUCGUcccGCGc -3'
miRNA:   3'- cGCCGuGCCUUGUGCUGgAGCAa--CGC- -5'
27564 5' -55.2 NC_005882.1 + 53 0.66 0.641493
Target:  5'- gGCGGgACGGAACGgGAUCacaCGgaacgGCGc -3'
miRNA:   3'- -CGCCgUGCCUUGUgCUGGa--GCaa---CGC- -5'
27564 5' -55.2 NC_005882.1 + 8732 0.66 0.630288
Target:  5'- -aGGCACGGGGCGgCGAagUUGUccUGCa -3'
miRNA:   3'- cgCCGUGCCUUGU-GCUggAGCA--ACGc -5'
27564 5' -55.2 NC_005882.1 + 9254 0.66 0.629168
Target:  5'- aGCGGUugGGGuauagccAgACGGCaUUCGggGCGc -3'
miRNA:   3'- -CGCCGugCCU-------UgUGCUG-GAGCaaCGC- -5'
27564 5' -55.2 NC_005882.1 + 5343 0.66 0.619085
Target:  5'- cGUGGCGaGGAAUACGACgugUCGUcggUGCc -3'
miRNA:   3'- -CGCCGUgCCUUGUGCUGg--AGCA---ACGc -5'
27564 5' -55.2 NC_005882.1 + 15008 0.66 0.619085
Target:  5'- aCGGCGCGGAugcugaggaagaGCugGACUgCG-UGCc -3'
miRNA:   3'- cGCCGUGCCU------------UGugCUGGaGCaACGc -5'
27564 5' -55.2 NC_005882.1 + 12828 0.66 0.615726
Target:  5'- cCGGCGCcGGAUGCGccucuucaggauuuGCCUCGcUGCGu -3'
miRNA:   3'- cGCCGUGcCUUGUGC--------------UGGAGCaACGC- -5'
27564 5' -55.2 NC_005882.1 + 17106 0.66 0.607894
Target:  5'- uGCGGCGucGAGCGCGuCCUgGUcggGCGc -3'
miRNA:   3'- -CGCCGUgcCUUGUGCuGGAgCAa--CGC- -5'
27564 5' -55.2 NC_005882.1 + 13276 0.66 0.607894
Target:  5'- aCGGCGCgccuGGAGCGCGAUUUUc-UGCGa -3'
miRNA:   3'- cGCCGUG----CCUUGUGCUGGAGcaACGC- -5'
27564 5' -55.2 NC_005882.1 + 252 0.67 0.596725
Target:  5'- gGCGGaCGCGGGAUcuacgACGACCcC--UGCGg -3'
miRNA:   3'- -CGCC-GUGCCUUG-----UGCUGGaGcaACGC- -5'
27564 5' -55.2 NC_005882.1 + 30210 0.67 0.596725
Target:  5'- cGCGcGUACGGcuGAC-CGACCUCG--GCa -3'
miRNA:   3'- -CGC-CGUGCC--UUGuGCUGGAGCaaCGc -5'
27564 5' -55.2 NC_005882.1 + 14453 0.67 0.585586
Target:  5'- cGCGGCGCGacuucuCGCaGACCUUGacggGCGa -3'
miRNA:   3'- -CGCCGUGCcuu---GUG-CUGGAGCaa--CGC- -5'
27564 5' -55.2 NC_005882.1 + 27593 0.67 0.585586
Target:  5'- cCGGCAUGGcGACGCaGGCCgCGgccGCGg -3'
miRNA:   3'- cGCCGUGCC-UUGUG-CUGGaGCaa-CGC- -5'
27564 5' -55.2 NC_005882.1 + 4202 0.67 0.574488
Target:  5'- gGCGGCAa-GAcgacgcugauGCGCGACCUCGaagaccGCGu -3'
miRNA:   3'- -CGCCGUgcCU----------UGUGCUGGAGCaa----CGC- -5'
27564 5' -55.2 NC_005882.1 + 31106 0.67 0.551353
Target:  5'- aGCGaucgACGGAaugacacGCACGACCUCGcaGCGc -3'
miRNA:   3'- -CGCcg--UGCCU-------UGUGCUGGAGCaaCGC- -5'
27564 5' -55.2 NC_005882.1 + 15984 0.67 0.541522
Target:  5'- aGCuGCGCGcGGACGCGcACgUCGgcgggUGCGu -3'
miRNA:   3'- -CGcCGUGC-CUUGUGC-UGgAGCa----ACGC- -5'
27564 5' -55.2 NC_005882.1 + 12463 0.68 0.498618
Target:  5'- cGCGGUucucGCGGAAaGCGGCCgCGUgccggccgGCGu -3'
miRNA:   3'- -CGCCG----UGCCUUgUGCUGGaGCAa-------CGC- -5'
27564 5' -55.2 NC_005882.1 + 25981 0.69 0.437334
Target:  5'- cGCGGCGCugaaGGAggcguucaaccGCGCGGCCUaCGgcgGCa -3'
miRNA:   3'- -CGCCGUG----CCU-----------UGUGCUGGA-GCaa-CGc -5'
27564 5' -55.2 NC_005882.1 + 12023 0.69 0.427543
Target:  5'- uCGGCGCGGuACGCcagcGCCUCGgcggGCa -3'
miRNA:   3'- cGCCGUGCCuUGUGc---UGGAGCaa--CGc -5'
27564 5' -55.2 NC_005882.1 + 7187 0.71 0.37164
Target:  5'- -aGGCAUGuGAGCACGGCCaauUUGgUGCGc -3'
miRNA:   3'- cgCCGUGC-CUUGUGCUGG---AGCaACGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.