Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27564 | 5' | -55.2 | NC_005882.1 | + | 15008 | 0.66 | 0.619085 |
Target: 5'- aCGGCGCGGAugcugaggaagaGCugGACUgCG-UGCc -3' miRNA: 3'- cGCCGUGCCU------------UGugCUGGaGCaACGc -5' |
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27564 | 5' | -55.2 | NC_005882.1 | + | 9254 | 0.66 | 0.629168 |
Target: 5'- aGCGGUugGGGuauagccAgACGGCaUUCGggGCGc -3' miRNA: 3'- -CGCCGugCCU-------UgUGCUG-GAGCaaCGC- -5' |
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27564 | 5' | -55.2 | NC_005882.1 | + | 8732 | 0.66 | 0.630288 |
Target: 5'- -aGGCACGGGGCGgCGAagUUGUccUGCa -3' miRNA: 3'- cgCCGUGCCUUGU-GCUggAGCA--ACGc -5' |
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27564 | 5' | -55.2 | NC_005882.1 | + | 53 | 0.66 | 0.641493 |
Target: 5'- gGCGGgACGGAACGgGAUCacaCGgaacgGCGc -3' miRNA: 3'- -CGCCgUGCCUUGUgCUGGa--GCaa---CGC- -5' |
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27564 | 5' | -55.2 | NC_005882.1 | + | 32126 | 0.66 | 0.652689 |
Target: 5'- cCGGCcUGGGGCGCGAUaUCGUcccGCGc -3' miRNA: 3'- cGCCGuGCCUUGUGCUGgAGCAa--CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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