miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27565 3' -53.1 NC_005882.1 + 26083 0.66 0.727421
Target:  5'- --cUUCaGCUcgaaccgGCCGAGcUUGCCGCc -3'
miRNA:   3'- cuaAAGcCGAua-----CGGCUCuGACGGCG- -5'
27565 3' -53.1 NC_005882.1 + 20657 0.66 0.704954
Target:  5'- ---gUCGGCgaagccaucUAUGCCGAcGACaagGaCCGCu -3'
miRNA:   3'- cuaaAGCCG---------AUACGGCU-CUGa--C-GGCG- -5'
27565 3' -53.1 NC_005882.1 + 23998 0.66 0.682174
Target:  5'- ---cUCGGCaagGCUGAGgaaaucaaGCUGCCGg -3'
miRNA:   3'- cuaaAGCCGauaCGGCUC--------UGACGGCg -5'
27565 3' -53.1 NC_005882.1 + 21114 0.66 0.682174
Target:  5'- ---cUCGGCguUGCCGAaacGACcGCCGa -3'
miRNA:   3'- cuaaAGCCGauACGGCU---CUGaCGGCg -5'
27565 3' -53.1 NC_005882.1 + 25713 0.67 0.647639
Target:  5'- cGAUUaCgGGCgcgGCCGuGGCaGCCGCc -3'
miRNA:   3'- -CUAAaG-CCGauaCGGCuCUGaCGGCG- -5'
27565 3' -53.1 NC_005882.1 + 31596 0.67 0.636079
Target:  5'- ----aCGGCUGgcaGCCGGGGCaacucgGCuCGCu -3'
miRNA:   3'- cuaaaGCCGAUa--CGGCUCUGa-----CG-GCG- -5'
27565 3' -53.1 NC_005882.1 + 5779 0.67 0.636079
Target:  5'- gGAgcgCGGCgggGCCGAc-CUGCUGCa -3'
miRNA:   3'- -CUaaaGCCGauaCGGCUcuGACGGCG- -5'
27565 3' -53.1 NC_005882.1 + 17808 0.67 0.624516
Target:  5'- ----aCGGCUGgggcUGCCGG---UGCCGCg -3'
miRNA:   3'- cuaaaGCCGAU----ACGGCUcugACGGCG- -5'
27565 3' -53.1 NC_005882.1 + 12543 0.67 0.61296
Target:  5'- ----gCGGCg--GCCGGcGCUGCgGCg -3'
miRNA:   3'- cuaaaGCCGauaCGGCUcUGACGgCG- -5'
27565 3' -53.1 NC_005882.1 + 21167 0.67 0.611806
Target:  5'- cGUUUCGGCaacGCCGAGcgccuucGCgccgGCUGCg -3'
miRNA:   3'- cUAAAGCCGauaCGGCUC-------UGa---CGGCG- -5'
27565 3' -53.1 NC_005882.1 + 6716 0.68 0.589915
Target:  5'- ---cUUGGCgcagcacGCCGAGACgcacggcgcGCCGCa -3'
miRNA:   3'- cuaaAGCCGaua----CGGCUCUGa--------CGGCG- -5'
27565 3' -53.1 NC_005882.1 + 26775 0.68 0.578445
Target:  5'- ----gCGGaUcgGCCGGGAUgggcgGCCGCg -3'
miRNA:   3'- cuaaaGCCgAuaCGGCUCUGa----CGGCG- -5'
27565 3' -53.1 NC_005882.1 + 29170 0.68 0.555663
Target:  5'- ---aUCGGCUAcGCCGGcGC-GCCGUu -3'
miRNA:   3'- cuaaAGCCGAUaCGGCUcUGaCGGCG- -5'
27565 3' -53.1 NC_005882.1 + 22166 0.69 0.544369
Target:  5'- -uUUUCGGCgggcGCCGuGAUUGUCGa -3'
miRNA:   3'- cuAAAGCCGaua-CGGCuCUGACGGCg -5'
27565 3' -53.1 NC_005882.1 + 17949 0.69 0.544369
Target:  5'- ---cUUGaGCgucGUGCCGAGGCggucgccgGCCGCc -3'
miRNA:   3'- cuaaAGC-CGa--UACGGCUCUGa-------CGGCG- -5'
27565 3' -53.1 NC_005882.1 + 4946 0.69 0.522014
Target:  5'- ---aUCGGCUuugucgagGUGCuuguacggguCGAGACgGCCGCc -3'
miRNA:   3'- cuaaAGCCGA--------UACG----------GCUCUGaCGGCG- -5'
27565 3' -53.1 NC_005882.1 + 24070 0.69 0.51097
Target:  5'- ---aUCGGCaagGUCGAG-CUGCCGg -3'
miRNA:   3'- cuaaAGCCGauaCGGCUCuGACGGCg -5'
27565 3' -53.1 NC_005882.1 + 33790 0.7 0.457352
Target:  5'- ---gUCGGaUGUGCUGAGAgUGgCGCu -3'
miRNA:   3'- cuaaAGCCgAUACGGCUCUgACgGCG- -5'
27565 3' -53.1 NC_005882.1 + 3651 0.71 0.426664
Target:  5'- ----cCGGCU-UGUCGAGACgGCCGa -3'
miRNA:   3'- cuaaaGCCGAuACGGCUCUGaCGGCg -5'
27565 3' -53.1 NC_005882.1 + 17288 0.73 0.317154
Target:  5'- ---cUCGGCUAcUGCaUGAaGCUGCCGCc -3'
miRNA:   3'- cuaaAGCCGAU-ACG-GCUcUGACGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.