miRNA display CGI


Results 21 - 40 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27566 3' -53.1 NC_005882.1 + 25446 0.67 0.670782
Target:  5'- cGCCUggGGGACgCgaUGGCGCGgGCcguuGCGCa -3'
miRNA:   3'- -CGGAagCUUUG-Ga-ACCGCGU-CG----UGCG- -5'
27566 3' -53.1 NC_005882.1 + 13698 0.67 0.659317
Target:  5'- gGCCggaCGGuuCCUU-GCGCagcuucaccAGCACGCg -3'
miRNA:   3'- -CGGaa-GCUuuGGAAcCGCG---------UCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 32982 0.67 0.647824
Target:  5'- gGCCgcacgCGcuACCUgaaGGCGCAGguCGa -3'
miRNA:   3'- -CGGaa---GCuuUGGAa--CCGCGUCguGCg -5'
27566 3' -53.1 NC_005882.1 + 31374 0.67 0.636315
Target:  5'- aGCUggUCGGcgugacgcGGCUgccGGCGCAGCcCGCg -3'
miRNA:   3'- -CGGa-AGCU--------UUGGaa-CCGCGUCGuGCG- -5'
27566 3' -53.1 NC_005882.1 + 11221 0.67 0.624801
Target:  5'- cGgCUUCGA-----UGaGCGCAGCGCGUg -3'
miRNA:   3'- -CgGAAGCUuuggaAC-CGCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 21805 0.67 0.624801
Target:  5'- uCCgcgUCGAAc---UGGCGaCGGCGCGCg -3'
miRNA:   3'- cGGa--AGCUUuggaACCGC-GUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 10864 0.68 0.613295
Target:  5'- uGCUguccgCGAucAACCUggucgUGGguucguCGCAGCGCGCg -3'
miRNA:   3'- -CGGaa---GCU--UUGGA-----ACC------GCGUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 15182 0.68 0.601807
Target:  5'- aCC-UCGAAACCcUGuuugcaggcccaGCGCAGCACcgGCg -3'
miRNA:   3'- cGGaAGCUUUGGaAC------------CGCGUCGUG--CG- -5'
27566 3' -53.1 NC_005882.1 + 202 0.68 0.578927
Target:  5'- uGCCUUCG--GCCUga-CGCGGCccuCGCg -3'
miRNA:   3'- -CGGAAGCuuUGGAaccGCGUCGu--GCG- -5'
27566 3' -53.1 NC_005882.1 + 15667 0.69 0.556238
Target:  5'- cGCCcUUGAuGACCUguacGGCGCgcagguccgcgAGCACGUc -3'
miRNA:   3'- -CGGaAGCU-UUGGAa---CCGCG-----------UCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 19771 0.69 0.556238
Target:  5'- uGCCgaaggucgUCGAA--UUUGGCG-AGCACGCc -3'
miRNA:   3'- -CGGa-------AGCUUugGAACCGCgUCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 28311 0.69 0.556238
Target:  5'- cGCCggCGgcACCUUGG-GCuGUACGg -3'
miRNA:   3'- -CGGaaGCuuUGGAACCgCGuCGUGCg -5'
27566 3' -53.1 NC_005882.1 + 21149 0.69 0.544989
Target:  5'- cGCCUUCGc-GCCggcuGCGCA-CACGCc -3'
miRNA:   3'- -CGGAAGCuuUGGaac-CGCGUcGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 28043 0.69 0.522721
Target:  5'- aGCUggCGAAGCUgc-GCGCGGCggugaGCGCa -3'
miRNA:   3'- -CGGaaGCUUUGGaacCGCGUCG-----UGCG- -5'
27566 3' -53.1 NC_005882.1 + 25865 0.69 0.511719
Target:  5'- cGCCUUCGAgaauggaguuguGACCcUGGCucGUGGCAagggcCGCa -3'
miRNA:   3'- -CGGAAGCU------------UUGGaACCG--CGUCGU-----GCG- -5'
27566 3' -53.1 NC_005882.1 + 25730 0.69 0.511719
Target:  5'- gGCCUgcCGAAcagcGCCgauuacgGGCGCGGC-CGUg -3'
miRNA:   3'- -CGGAa-GCUU----UGGaa-----CCGCGUCGuGCG- -5'
27566 3' -53.1 NC_005882.1 + 16412 0.7 0.490012
Target:  5'- aGCCguaCGGGuucagauacgucGCCUccUGGCGCGGCAC-Ca -3'
miRNA:   3'- -CGGaa-GCUU------------UGGA--ACCGCGUCGUGcG- -5'
27566 3' -53.1 NC_005882.1 + 29676 0.7 0.490012
Target:  5'- cGUUUUCGGguugugguagccGACCUUGGC-CuGCGCGUa -3'
miRNA:   3'- -CGGAAGCU------------UUGGAACCGcGuCGUGCG- -5'
27566 3' -53.1 NC_005882.1 + 25698 0.7 0.47932
Target:  5'- aCCUUCGAAGCCggccuGCGCGaCAuCGCg -3'
miRNA:   3'- cGGAAGCUUUGGaac--CGCGUcGU-GCG- -5'
27566 3' -53.1 NC_005882.1 + 23267 0.7 0.47932
Target:  5'- cGCCUgcgCGAGcgucguGCCgaucGGCGCAucgauGUACGCg -3'
miRNA:   3'- -CGGAa--GCUU------UGGaa--CCGCGU-----CGUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.