miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27568 5' -57.2 NC_005882.1 + 708 0.72 0.200188
Target:  5'- cCCAGgcacugaucgaGCUGGCCGAcaucgGCGCCGACc -3'
miRNA:   3'- uGGUCaa---------CGGCCGGCUaa---CGUGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 2153 0.67 0.421167
Target:  5'- gGCCAGaucaacaCCGGCCGcgUGCucgcgcugcGCCGAUu -3'
miRNA:   3'- -UGGUCaac----GGCCGGCuaACG---------UGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 3537 0.7 0.256328
Target:  5'- gGCCuGggcgUGCCGGUCGucacCGCCGACg -3'
miRNA:   3'- -UGGuCa---ACGGCCGGCuaacGUGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 7305 1.08 0.000419
Target:  5'- uACCAGUUGCCGGCCGAUUGCACCGACc -3'
miRNA:   3'- -UGGUCAACGGCCGGCUAACGUGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 12444 0.69 0.307217
Target:  5'- gGCCGcgUGCCGGCCGGcgUUGaacCGCuCGACa -3'
miRNA:   3'- -UGGUcaACGGCCGGCU--AAC---GUG-GCUG- -5'
27568 5' -57.2 NC_005882.1 + 12528 0.68 0.36548
Target:  5'- gGCCAGUgugucgcgGCggCGGCCGGc-GCugCGGCg -3'
miRNA:   3'- -UGGUCAa-------CG--GCCGGCUaaCGugGCUG- -5'
27568 5' -57.2 NC_005882.1 + 12614 0.71 0.236724
Target:  5'- cGCCAGUgcGCCGaucGCCGca-GCGCCGGCc -3'
miRNA:   3'- -UGGUCAa-CGGC---CGGCuaaCGUGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 12677 0.66 0.492165
Target:  5'- gACCuucgcGUcGCCGGCaagc-GCACCGGCg -3'
miRNA:   3'- -UGGu----CAaCGGCCGgcuaaCGUGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 12929 0.77 0.088251
Target:  5'- gACCAGUgcUGCC-GCCGGagcugUUGCGCCGGCc -3'
miRNA:   3'- -UGGUCA--ACGGcCGGCU-----AACGUGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 13791 0.72 0.212555
Target:  5'- uCCAGUacuugGCCGGCCGcgcgaUGC-CCGGCu -3'
miRNA:   3'- uGGUCAa----CGGCCGGCua---ACGuGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 16287 0.68 0.38347
Target:  5'- aACCAGUcgGCCGGCU-----UGCCGACg -3'
miRNA:   3'- -UGGUCAa-CGGCCGGcuaacGUGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 19094 0.76 0.108191
Target:  5'- gGCCugcaGGUUGCCGGCCGA---CGCCGAg -3'
miRNA:   3'- -UGG----UCAACGGCCGGCUaacGUGGCUg -5'
27568 5' -57.2 NC_005882.1 + 20500 0.66 0.437851
Target:  5'- gACCGGaucgcUGCCGGCCGcggugaacuucucgGUcGCGCUGAg -3'
miRNA:   3'- -UGGUCa----ACGGCCGGC--------------UAaCGUGGCUg -5'
27568 5' -57.2 NC_005882.1 + 21087 0.68 0.374401
Target:  5'- gGCguGUgcgcaGCCGGCgCGAagGCGCuCGGCg -3'
miRNA:   3'- -UGguCAa----CGGCCG-GCUaaCGUG-GCUG- -5'
27568 5' -57.2 NC_005882.1 + 21239 0.66 0.449853
Target:  5'- gACCGGUgcGCCGGCCaugaccaGGaUGaCGCCGAg -3'
miRNA:   3'- -UGGUCAa-CGGCCGG-------CUaAC-GUGGCUg -5'
27568 5' -57.2 NC_005882.1 + 21300 0.76 0.107878
Target:  5'- cGCCGGUUGCCuucggaauggcuuGGCCGGccGCGuCCGACu -3'
miRNA:   3'- -UGGUCAACGG-------------CCGGCUaaCGU-GGCUG- -5'
27568 5' -57.2 NC_005882.1 + 21623 0.67 0.392682
Target:  5'- aGCCAG-UGCCgGGCCaGAUUG-ACCguGACa -3'
miRNA:   3'- -UGGUCaACGG-CCGG-CUAACgUGG--CUG- -5'
27568 5' -57.2 NC_005882.1 + 22188 0.7 0.24899
Target:  5'- uGCCAcagGCCGGCCGAcucgccgagaaacUUGuCGCUGACc -3'
miRNA:   3'- -UGGUcaaCGGCCGGCU-------------AAC-GUGGCUG- -5'
27568 5' -57.2 NC_005882.1 + 22390 0.68 0.38347
Target:  5'- uACCuGaaGCCGGCCGca-GCGCCGuCg -3'
miRNA:   3'- -UGGuCaaCGGCCGGCuaaCGUGGCuG- -5'
27568 5' -57.2 NC_005882.1 + 22644 0.66 0.492165
Target:  5'- gAUCGGUgcggUGCCGaucaaGCCGAUcacCGCCGACu -3'
miRNA:   3'- -UGGUCA----ACGGC-----CGGCUAac-GUGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.