Results 21 - 30 of 30 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 12614 | 0.71 | 0.236724 |
|
Target: 5'- cGCCAGUgcGCCGaucGCCGca-GCGCCGGCc -3' miRNA: 3'- -UGGUCAa-CGGC---CGGCuaaCGUGGCUG- -5' |
|||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 13791 | 0.72 | 0.212555 |
|
Target: 5'- uCCAGUacuugGCCGGCCGcgcgaUGC-CCGGCu -3' miRNA: 3'- uGGUCAa----CGGCCGGCua---ACGuGGCUG- -5' |
|||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 708 | 0.72 | 0.200188 |
|
Target: 5'- cCCAGgcacugaucgaGCUGGCCGAcaucgGCGCCGACc -3' miRNA: 3'- uGGUCaa---------CGGCCGGCUaa---CGUGGCUG- -5' |
|||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 23222 | 0.73 | 0.17055 |
|
Target: 5'- cGCgCAGgcGCUGGCCGGgcGCggGCCGGCg -3' miRNA: 3'- -UG-GUCaaCGGCCGGCUaaCG--UGGCUG- -5' |
|||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 26131 | 0.73 | 0.165855 |
|
Target: 5'- cGCCAGccucgaaGUCGGCCGcgaagGCGCCGGCa -3' miRNA: 3'- -UGGUCaa-----CGGCCGGCuaa--CGUGGCUG- -5' |
|||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 28690 | 0.74 | 0.144079 |
|
Target: 5'- gGCCcGcgGcCCGGUCGAUUGCGCCGGu -3' miRNA: 3'- -UGGuCaaC-GGCCGGCUAACGUGGCUg -5' |
|||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 19094 | 0.76 | 0.108191 |
|
Target: 5'- gGCCugcaGGUUGCCGGCCGA---CGCCGAg -3' miRNA: 3'- -UGG----UCAACGGCCGGCUaacGUGGCUg -5' |
|||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 21300 | 0.76 | 0.107878 |
|
Target: 5'- cGCCGGUUGCCuucggaauggcuuGGCCGGccGCGuCCGACu -3' miRNA: 3'- -UGGUCAACGG-------------CCGGCUaaCGU-GGCUG- -5' |
|||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 12929 | 0.77 | 0.088251 |
|
Target: 5'- gACCAGUgcUGCC-GCCGGagcugUUGCGCCGGCc -3' miRNA: 3'- -UGGUCA--ACGGcCGGCU-----AACGUGGCUG- -5' |
|||||||
| 27568 | 5' | -57.2 | NC_005882.1 | + | 7305 | 1.08 | 0.000419 |
|
Target: 5'- uACCAGUUGCCGGCCGAUUGCACCGACc -3' miRNA: 3'- -UGGUCAACGGCCGGCUAACGUGGCUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home