miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27569 3' -50.5 NC_005882.1 + 28715 0.69 0.70129
Target:  5'- aGCGcGCUgCUCGCCGUCGAgaGCuggccCGCg -3'
miRNA:   3'- -CGUuUGGaGAGCGGCAGCU--UGua---GUG- -5'
27569 3' -50.5 NC_005882.1 + 19303 0.69 0.689793
Target:  5'- aCGAcGCCUUcgUUGCCGUCGcugaaauuGACGUCGCg -3'
miRNA:   3'- cGUU-UGGAG--AGCGGCAGC--------UUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 14787 0.69 0.689793
Target:  5'- cCGAGCUgCUCGUggaacgcugccuCGUCGAugAUCACg -3'
miRNA:   3'- cGUUUGGaGAGCG------------GCAGCUugUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 24410 0.69 0.682864
Target:  5'- aGCAcuUC-CUCGCCGUCGAugAccugcuugauguaggUCGCg -3'
miRNA:   3'- -CGUuuGGaGAGCGGCAGCUugU---------------AGUG- -5'
27569 3' -50.5 NC_005882.1 + 26845 0.7 0.666624
Target:  5'- uCAGGCCcca-GCCGgccgCGAGCGUCGCg -3'
miRNA:   3'- cGUUUGGagagCGGCa---GCUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 1953 0.7 0.654978
Target:  5'- uCGAGCaCUUUCGCUGgccgCGAGCGucUCGCg -3'
miRNA:   3'- cGUUUG-GAGAGCGGCa---GCUUGU--AGUG- -5'
27569 3' -50.5 NC_005882.1 + 2135 0.7 0.631628
Target:  5'- cGC-GugCUCgcgcugCGCCGaUUGGACAUCACc -3'
miRNA:   3'- -CGuUugGAGa-----GCGGC-AGCUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 19763 0.7 0.631628
Target:  5'- gGCAucGCCU-UCGCCGaacUCGAACGgcUCACg -3'
miRNA:   3'- -CGUu-UGGAgAGCGGC---AGCUUGU--AGUG- -5'
27569 3' -50.5 NC_005882.1 + 21784 0.7 0.619948
Target:  5'- cGCGcggGACCUUcauuUCGCCcggcUCGGGCGUCGCc -3'
miRNA:   3'- -CGU---UUGGAG----AGCGGc---AGCUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 26288 0.71 0.585023
Target:  5'- cGCcGGCCuUCUUGUaggCGUCGAugGUCGCc -3'
miRNA:   3'- -CGuUUGG-AGAGCG---GCAGCUugUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 4956 0.71 0.585023
Target:  5'- gGCAcggaacacGACCUCguugCGCCGcgcgUCGAAC-UCGCg -3'
miRNA:   3'- -CGU--------UUGGAGa---GCGGC----AGCUUGuAGUG- -5'
27569 3' -50.5 NC_005882.1 + 15274 0.71 0.585023
Target:  5'- aGCGGGCgUCgaccgggagCGCCGUgagcagcgggcCGAGCGUCGCu -3'
miRNA:   3'- -CGUUUGgAGa--------GCGGCA-----------GCUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 14914 0.71 0.585023
Target:  5'- -aGGGCUUCUUGCCGgaaCGGACGUC-Cg -3'
miRNA:   3'- cgUUUGGAGAGCGGCa--GCUUGUAGuG- -5'
27569 3' -50.5 NC_005882.1 + 7797 0.71 0.585023
Target:  5'- cGCGAACCccaUCGCC-UCaAGCGUCGCg -3'
miRNA:   3'- -CGUUUGGag-AGCGGcAGcUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 1346 0.71 0.561943
Target:  5'- aGCGGGCCg--UGCCGcUCGAugucuGCAUCACc -3'
miRNA:   3'- -CGUUUGGagaGCGGC-AGCU-----UGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 18484 0.72 0.527823
Target:  5'- gGCAAGCCggUCGCgGaUUGAAgGUCACg -3'
miRNA:   3'- -CGUUUGGagAGCGgC-AGCUUgUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 10412 0.75 0.3914
Target:  5'- ---cACCgggCUUGCCGUCcGACGUCACa -3'
miRNA:   3'- cguuUGGa--GAGCGGCAGcUUGUAGUG- -5'
27569 3' -50.5 NC_005882.1 + 7894 1.08 0.002467
Target:  5'- aCGAACCUCUCGCCGUCGAACAUCACg -3'
miRNA:   3'- cGUUUGGAGAGCGGCAGCUUGUAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.