Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2757 | 3' | -53.4 | NC_001491.2 | + | 147043 | 0.7 | 0.82221 |
Target: 5'- cGCGGAg--CCggagaagGGCUcGCCGCcGGGCGAg -3' miRNA: 3'- -CGUUUauaGG-------CCGA-CGGCGuUCCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 46041 | 0.68 | 0.906496 |
Target: 5'- -gGAAUGUCCgcgGGC-GCCuGCGAgGGCGAa -3' miRNA: 3'- cgUUUAUAGG---CCGaCGG-CGUU-CCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 79070 | 0.68 | 0.893378 |
Target: 5'- uGCGAggGUCUGGCUGuCCGgGGguuGGCGu -3' miRNA: 3'- -CGUUuaUAGGCCGAC-GGCgUU---CCGCu -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 116177 | 0.68 | 0.893378 |
Target: 5'- gGCGAGcccuucUCCGGCUccgcgGCCGCGgAGGgGAg -3' miRNA: 3'- -CGUUUau----AGGCCGA-----CGGCGU-UCCgCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 144844 | 0.69 | 0.886458 |
Target: 5'- cGCug----CCGGCgGCCG-AGGGCGAc -3' miRNA: 3'- -CGuuuauaGGCCGaCGGCgUUCCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 135957 | 0.69 | 0.879301 |
Target: 5'- -----aAUCCGGacCUGCCGCuagGGGCGu -3' miRNA: 3'- cguuuaUAGGCC--GACGGCGu--UCCGCu -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 118355 | 0.69 | 0.871914 |
Target: 5'- aGCGGcgGUCCuccuaccccggcGGCUGCCGCccagccGGCGu -3' miRNA: 3'- -CGUUuaUAGG------------CCGACGGCGuu----CCGCu -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 144725 | 0.69 | 0.871914 |
Target: 5'- ------uUCUGGCUGCCGUAcagcaggucGGGCGc -3' miRNA: 3'- cguuuauAGGCCGACGGCGU---------UCCGCu -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 121728 | 0.69 | 0.871163 |
Target: 5'- gGUGGAUAUCCcccugaacaagcGGUUGacgucccCCGCGAGGCGGu -3' miRNA: 3'- -CGUUUAUAGG------------CCGAC-------GGCGUUCCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 45239 | 0.68 | 0.906496 |
Target: 5'- cGCAGAUuuggCCGGg-GCCGC--GGCGGg -3' miRNA: 3'- -CGUUUAua--GGCCgaCGGCGuuCCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 45206 | 0.68 | 0.906496 |
Target: 5'- cGCAGAUuuggCCGGg-GCCGC--GGCGGg -3' miRNA: 3'- -CGUUUAua--GGCCgaCGGCGuuCCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 45173 | 0.68 | 0.906496 |
Target: 5'- cGCAGAUuuggCCGGg-GCCGC--GGCGGg -3' miRNA: 3'- -CGUUUAua--GGCCgaCGGCGuuCCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 125603 | 0.66 | 0.964418 |
Target: 5'- cCGGGgcggCC-GCUGCCGCGGcGGCGGc -3' miRNA: 3'- cGUUUaua-GGcCGACGGCGUU-CCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 10814 | 0.66 | 0.960922 |
Target: 5'- aCAGAUAga-GGUgcaugaggGCCGCGAGGCa- -3' miRNA: 3'- cGUUUAUaggCCGa-------CGGCGUUCCGcu -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 81120 | 0.67 | 0.939893 |
Target: 5'- uGCGua-GUgCGGCgGCUGCGuAGGCGGc -3' miRNA: 3'- -CGUuuaUAgGCCGaCGGCGU-UCCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 144325 | 0.67 | 0.934445 |
Target: 5'- uCAGAUAUCCaGGCUuCCGCGccgagcuccgccgAGGCa- -3' miRNA: 3'- cGUUUAUAGG-CCGAcGGCGU-------------UCCGcu -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 35317 | 0.67 | 0.929762 |
Target: 5'- gGCAAuggAUCCGGC-GCCGUAGucccuGGCc- -3' miRNA: 3'- -CGUUua-UAGGCCGaCGGCGUU-----CCGcu -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 138508 | 0.68 | 0.918629 |
Target: 5'- uGCugggGUCCGcGCUGCUGgCAucGGCGGc -3' miRNA: 3'- -CGuuuaUAGGC-CGACGGC-GUu-CCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 45107 | 0.68 | 0.906496 |
Target: 5'- cGCAGAUuuggCCGGg-GCCGC--GGCGGg -3' miRNA: 3'- -CGUUUAua--GGCCgaCGGCGuuCCGCU- -5' |
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2757 | 3' | -53.4 | NC_001491.2 | + | 45140 | 0.68 | 0.906496 |
Target: 5'- cGCAGAUuuggCCGGg-GCCGC--GGCGGg -3' miRNA: 3'- -CGUUUAua--GGCCgaCGGCGuuCCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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