Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2757 | 5' | -55.4 | NC_001491.2 | + | 147300 | 0.68 | 0.80461 |
Target: 5'- gGGCAucgccuCCUGgcugagGUGGGCCGGGgAGGc -3' miRNA: 3'- -CCGUu-----GGACaa----CGCUCGGCCUgUCUu -5' |
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2757 | 5' | -55.4 | NC_001491.2 | + | 76831 | 0.68 | 0.839305 |
Target: 5'- uGGCAGCC---UGCGAGCgGuGCAGGGu -3' miRNA: 3'- -CCGUUGGacaACGCUCGgCcUGUCUU- -5' |
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2757 | 5' | -55.4 | NC_001491.2 | + | 140235 | 0.67 | 0.855517 |
Target: 5'- cGGgGACg-GggGCGGGCgCGGACGGGc -3' miRNA: 3'- -CCgUUGgaCaaCGCUCG-GCCUGUCUu -5' |
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2757 | 5' | -55.4 | NC_001491.2 | + | 146492 | 0.67 | 0.855517 |
Target: 5'- cGGCAGCCU--UGCGucggggcccgagGGCCGcGCAGAc -3' miRNA: 3'- -CCGUUGGAcaACGC------------UCGGCcUGUCUu -5' |
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2757 | 5' | -55.4 | NC_001491.2 | + | 103160 | 0.66 | 0.898959 |
Target: 5'- uGGUAaacGCCgGUaGCGAGCCGuugguGCAGAAg -3' miRNA: 3'- -CCGU---UGGaCAaCGCUCGGCc----UGUCUU- -5' |
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2757 | 5' | -55.4 | NC_001491.2 | + | 127790 | 0.66 | 0.905386 |
Target: 5'- cGGCAuaacagaguucAUCUGggGCGAGCCGucCGGu- -3' miRNA: 3'- -CCGU-----------UGGACaaCGCUCGGCcuGUCuu -5' |
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2757 | 5' | -55.4 | NC_001491.2 | + | 137693 | 0.66 | 0.905386 |
Target: 5'- cGGCGGCCgUGgacCGAGCgGGcGCGGGAg -3' miRNA: 3'- -CCGUUGG-ACaacGCUCGgCC-UGUCUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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