miRNA display CGI


Results 41 - 52 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27571 5' -51.9 NC_005882.1 + 14093 0.69 0.643922
Target:  5'- -cGCCGAUcCAGGCGAA-CGuAUCGCGc -3'
miRNA:   3'- gcCGGUUAcGUCUGCUUuGC-UAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 18624 0.67 0.745669
Target:  5'- -cGCUAAccUGUcGACGAGcCGAUCGCGc -3'
miRNA:   3'- gcCGGUU--ACGuCUGCUUuGCUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 15437 0.67 0.745669
Target:  5'- aCGGCCAAUaccucGCAGaagucGCGAugcagcgcuacGGCGcAUCGCGc -3'
miRNA:   3'- -GCCGGUUA-----CGUC-----UGCU-----------UUGC-UAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 12157 0.67 0.734694
Target:  5'- cCGGCCGA-GCuGGGCGAGGCGca-GCc -3'
miRNA:   3'- -GCCGGUUaCG-UCUGCUUUGCuagCGc -5'
27571 5' -51.9 NC_005882.1 + 20444 0.67 0.734694
Target:  5'- gCGGCCg--GCAG-CGAucCGGUCgGCGu -3'
miRNA:   3'- -GCCGGuuaCGUCuGCUuuGCUAG-CGC- -5'
27571 5' -51.9 NC_005882.1 + 28585 0.68 0.712419
Target:  5'- uCGGCgCAAggcgGCuuGGCGAacgcGACGAUCGgGa -3'
miRNA:   3'- -GCCG-GUUa---CGu-CUGCU----UUGCUAGCgC- -5'
27571 5' -51.9 NC_005882.1 + 33993 0.68 0.701145
Target:  5'- uGGCCGGUGaguuguuuagcCAGuACGGAACGAcugcCGCGc -3'
miRNA:   3'- gCCGGUUAC-----------GUC-UGCUUUGCUa---GCGC- -5'
27571 5' -51.9 NC_005882.1 + 30182 0.68 0.701145
Target:  5'- aCGGUCAGUGCGu-CGAAGCccggcuUCGCGc -3'
miRNA:   3'- -GCCGGUUACGUcuGCUUUGcu----AGCGC- -5'
27571 5' -51.9 NC_005882.1 + 11067 0.68 0.701145
Target:  5'- aCGaGCaAAUGCGGGCGAuGgGAUaCGCGg -3'
miRNA:   3'- -GC-CGgUUACGUCUGCUuUgCUA-GCGC- -5'
27571 5' -51.9 NC_005882.1 + 8762 0.68 0.689797
Target:  5'- uGGUgcaGAUGCuuGACGAAGCGAggucUCGCc -3'
miRNA:   3'- gCCGg--UUACGu-CUGCUUUGCU----AGCGc -5'
27571 5' -51.9 NC_005882.1 + 29073 0.68 0.678388
Target:  5'- aGGCCAGU-CcGACGAGAUcgaGGUCGUGc -3'
miRNA:   3'- gCCGGUUAcGuCUGCUUUG---CUAGCGC- -5'
27571 5' -51.9 NC_005882.1 + 29303 0.76 0.258049
Target:  5'- aGGCCAAaGCGuACGAgcacaccacgcuggcGACGAUCGCGg -3'
miRNA:   3'- gCCGGUUaCGUcUGCU---------------UUGCUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.