miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27572 3' -58.3 NC_005882.1 + 7760 0.66 0.466408
Target:  5'- aGCC-UCGACGCcGCCCgcgaGcgCCUCg- -3'
miRNA:   3'- -CGGcAGCUGCGuCGGGa---CaaGGAGgu -5'
27572 3' -58.3 NC_005882.1 + 31673 0.66 0.456369
Target:  5'- gGUCGUCGACGagcgAGCCgaGUUgCC-CCGg -3'
miRNA:   3'- -CGGCAGCUGCg---UCGGgaCAA-GGaGGU- -5'
27572 3' -58.3 NC_005882.1 + 8887 0.66 0.456369
Target:  5'- uGCCGggUCGGCGCagauuucgccAGCCUUGagCC-CCAg -3'
miRNA:   3'- -CGGC--AGCUGCG----------UCGGGACaaGGaGGU- -5'
27572 3' -58.3 NC_005882.1 + 31392 0.66 0.435676
Target:  5'- gGCUGcCGGCGCAGCCCgcgaagacgacgcUGcgCUUCUc -3'
miRNA:   3'- -CGGCaGCUGCGUCGGG-------------ACaaGGAGGu -5'
27572 3' -58.3 NC_005882.1 + 25162 0.66 0.426975
Target:  5'- gGCCGUCGugGcCGGCuCCUa--CCUCa- -3'
miRNA:   3'- -CGGCAGCugC-GUCG-GGAcaaGGAGgu -5'
27572 3' -58.3 NC_005882.1 + 11198 0.67 0.408013
Target:  5'- uGCUGUCGGCGguGC-CUGUgCCUa-- -3'
miRNA:   3'- -CGGCAGCUGCguCGgGACAaGGAggu -5'
27572 3' -58.3 NC_005882.1 + 22643 0.67 0.408013
Target:  5'- -aCGUCGACGCGGCgCaGUUCggCCc -3'
miRNA:   3'- cgGCAGCUGCGUCGgGaCAAGgaGGu -5'
27572 3' -58.3 NC_005882.1 + 28904 0.67 0.398732
Target:  5'- gGCCGaCGACGUAGCCgaUGaggagCUUCCGc -3'
miRNA:   3'- -CGGCaGCUGCGUCGGg-ACaa---GGAGGU- -5'
27572 3' -58.3 NC_005882.1 + 32404 0.67 0.398732
Target:  5'- uGgCGUCGACGCAuccGCaCUgccGUUCCUCgCAg -3'
miRNA:   3'- -CgGCAGCUGCGU---CG-GGa--CAAGGAG-GU- -5'
27572 3' -58.3 NC_005882.1 + 22409 0.67 0.362991
Target:  5'- cGCCGUCGACcaAGCCCgcgcgCC-CCAg -3'
miRNA:   3'- -CGGCAGCUGcgUCGGGacaa-GGaGGU- -5'
27572 3' -58.3 NC_005882.1 + 33398 0.67 0.360402
Target:  5'- uGCCGUCGugGCAauaCCCUGgaUgcuggaauacgacuCUCCAg -3'
miRNA:   3'- -CGGCAGCugCGUc--GGGACaaG--------------GAGGU- -5'
27572 3' -58.3 NC_005882.1 + 14584 0.68 0.345973
Target:  5'- gGCCcaGUCGGCGCAGUCCcGgaugaaCUCCu -3'
miRNA:   3'- -CGG--CAGCUGCGUCGGGaCaag---GAGGu -5'
27572 3' -58.3 NC_005882.1 + 28704 0.68 0.316803
Target:  5'- cGCCGUCGAgagcuggccCGCGGCCCgGUcgauugcgccgguaaUCgUCCc -3'
miRNA:   3'- -CGGCAGCU---------GCGUCGGGaCA---------------AGgAGGu -5'
27572 3' -58.3 NC_005882.1 + 865 0.69 0.298408
Target:  5'- cGCaCGUCGACGCgcucgaauGGCUCaGUUCCgcCCAg -3'
miRNA:   3'- -CG-GCAGCUGCG--------UCGGGaCAAGGa-GGU- -5'
27572 3' -58.3 NC_005882.1 + 28380 0.77 0.080092
Target:  5'- gGCCGUCGACGCGGUCaaGgUCgUCCAg -3'
miRNA:   3'- -CGGCAGCUGCGUCGGgaCaAGgAGGU- -5'
27572 3' -58.3 NC_005882.1 + 8704 1.1 0.000235
Target:  5'- cGCCGUCGACGCAGCCCUGUUCCUCCAg -3'
miRNA:   3'- -CGGCAGCUGCGUCGGGACAAGGAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.