miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27572 5' -55.5 NC_005882.1 + 6541 0.66 0.60137
Target:  5'- -gCGGGaCGUCGUCUccGUCCG-CAGCGg -3'
miRNA:   3'- caGCUUcGUAGCAGA--CGGGCuGUCGC- -5'
27572 5' -55.5 NC_005882.1 + 21995 0.66 0.60137
Target:  5'- uGUCGAcggucGUGUCGUacuggCUGCCCgGAUAGCu -3'
miRNA:   3'- -CAGCUu----CGUAGCA-----GACGGG-CUGUCGc -5'
27572 5' -55.5 NC_005882.1 + 3453 0.66 0.567678
Target:  5'- -gCGAAGUcug--CUGCCUGACGGCa -3'
miRNA:   3'- caGCUUCGuagcaGACGGGCUGUCGc -5'
27572 5' -55.5 NC_005882.1 + 24147 0.66 0.567678
Target:  5'- uUCG-AGC-UUGUCcaggccGCCCGGCAGCu -3'
miRNA:   3'- cAGCuUCGuAGCAGa-----CGGGCUGUCGc -5'
27572 5' -55.5 NC_005882.1 + 15187 0.67 0.491361
Target:  5'- cUCGAAGCGaCGcUCgGCCCGcugcucACGGCGc -3'
miRNA:   3'- cAGCUUCGUaGC-AGaCGGGC------UGUCGC- -5'
27572 5' -55.5 NC_005882.1 + 25564 0.68 0.48083
Target:  5'- -cCGAGGCgGUCGUaCUGgCCGcGCAGCu -3'
miRNA:   3'- caGCUUCG-UAGCA-GACgGGC-UGUCGc -5'
27572 5' -55.5 NC_005882.1 + 923 0.69 0.429934
Target:  5'- uUCGAuuGCucGUCGUCcGCCUGACuGCGc -3'
miRNA:   3'- cAGCUu-CG--UAGCAGaCGGGCUGuCGC- -5'
27572 5' -55.5 NC_005882.1 + 29675 0.69 0.420138
Target:  5'- -cCGuGGGCGUCGUCgGCCagucugaagUGGCAGCGg -3'
miRNA:   3'- caGC-UUCGUAGCAGaCGG---------GCUGUCGC- -5'
27572 5' -55.5 NC_005882.1 + 4134 0.7 0.372356
Target:  5'- uUCGAggucgcgcaucAGCGUCGUCUugccgccGCCCGAUuccGCGa -3'
miRNA:   3'- cAGCU-----------UCGUAGCAGA-------CGGGCUGu--CGC- -5'
27572 5' -55.5 NC_005882.1 + 31470 0.71 0.30518
Target:  5'- aUCGAgaagcgcAGCGUCGUCuucgcgggcUGCgCCGGCAGCc -3'
miRNA:   3'- cAGCU-------UCGUAGCAG---------ACG-GGCUGUCGc -5'
27572 5' -55.5 NC_005882.1 + 6835 0.72 0.261865
Target:  5'- uGUCGGacAGCAgacgCGUUUGCgCGGCGGCu -3'
miRNA:   3'- -CAGCU--UCGUa---GCAGACGgGCUGUCGc -5'
27572 5' -55.5 NC_005882.1 + 19463 0.72 0.261864
Target:  5'- gGUCGgcGCAUCGUCUugucGCgCGACuucGCGg -3'
miRNA:   3'- -CAGCuuCGUAGCAGA----CGgGCUGu--CGC- -5'
27572 5' -55.5 NC_005882.1 + 9950 0.73 0.229188
Target:  5'- -cCGucGCGUCGgcgaUCUGCCCGAcCAGCu -3'
miRNA:   3'- caGCuuCGUAGC----AGACGGGCU-GUCGc -5'
27572 5' -55.5 NC_005882.1 + 21809 0.75 0.160086
Target:  5'- gGUCGAuGcCAUCGUC-GCCCGGCuGCGc -3'
miRNA:   3'- -CAGCUuC-GUAGCAGaCGGGCUGuCGC- -5'
27572 5' -55.5 NC_005882.1 + 8666 1.08 0.000624
Target:  5'- aGUCGAAGCAUCGUCUGCCCGACAGCGu -3'
miRNA:   3'- -CAGCUUCGUAGCAGACGGGCUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.