miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27573 3' -55.4 NC_005882.1 + 9463 0.66 0.604891
Target:  5'- cGguCCGCGUCGCuugAG-GUGAAAG-CCg -3'
miRNA:   3'- -UguGGCGCAGCG---UCgCACUUUCuGGa -5'
27573 3' -55.4 NC_005882.1 + 6369 0.66 0.5981
Target:  5'- -gGCCGCGUCGUAgaucgcaccuuuuuuGcCGUGGccGGCCg -3'
miRNA:   3'- ugUGGCGCAGCGU---------------C-GCACUuuCUGGa -5'
27573 3' -55.4 NC_005882.1 + 23379 0.66 0.593578
Target:  5'- gGCGuuCCGCGuuggUCGCGGUGUcguAGACCUu -3'
miRNA:   3'- -UGU--GGCGC----AGCGUCGCAcuuUCUGGA- -5'
27573 3' -55.4 NC_005882.1 + 19988 0.66 0.593578
Target:  5'- uCACCGCGuUCGCGgccgccGCGUaAucGACCUu -3'
miRNA:   3'- uGUGGCGC-AGCGU------CGCAcUuuCUGGA- -5'
27573 3' -55.4 NC_005882.1 + 31955 0.67 0.537716
Target:  5'- aGCcCCGUGUCGacgAGCG-GguAGACCUg -3'
miRNA:   3'- -UGuGGCGCAGCg--UCGCaCuuUCUGGA- -5'
27573 3' -55.4 NC_005882.1 + 22694 0.67 0.531123
Target:  5'- uGCGCCGCGUCGacgucggaCAGCGacugcaccggcguauUGAccGGCCc -3'
miRNA:   3'- -UGUGGCGCAGC--------GUCGC---------------ACUuuCUGGa -5'
27573 3' -55.4 NC_005882.1 + 21622 0.67 0.526744
Target:  5'- gACACCGUGUCGCAGaccuucAAGGCg- -3'
miRNA:   3'- -UGUGGCGCAGCGUCgcacu-UUCUGga -5'
27573 3' -55.4 NC_005882.1 + 26025 0.67 0.526744
Target:  5'- aGCGCCGCGUCGCccuugaucccgAGCGUcucGGAGAa-- -3'
miRNA:   3'- -UGUGGCGCAGCG-----------UCGCAc--UUUCUgga -5'
27573 3' -55.4 NC_005882.1 + 18344 0.67 0.515857
Target:  5'- -gGCCGCGUCGCGuCGc--AAGGCCg -3'
miRNA:   3'- ugUGGCGCAGCGUcGCacuUUCUGGa -5'
27573 3' -55.4 NC_005882.1 + 24637 0.67 0.515857
Target:  5'- gACGuuGCGUCGCGGCaagcgcaagGAAAuGGCCc -3'
miRNA:   3'- -UGUggCGCAGCGUCGca-------CUUU-CUGGa -5'
27573 3' -55.4 NC_005882.1 + 27117 0.67 0.515857
Target:  5'- gGC-CCGCGUCcuggGCGGCcagcucGUGAAcGGCCUg -3'
miRNA:   3'- -UGuGGCGCAG----CGUCG------CACUUuCUGGA- -5'
27573 3' -55.4 NC_005882.1 + 4967 0.67 0.515857
Target:  5'- -uGCCGCGcCGCGGCacgGAAcacGACCUc -3'
miRNA:   3'- ugUGGCGCaGCGUCGca-CUUu--CUGGA- -5'
27573 3' -55.4 NC_005882.1 + 1881 0.67 0.505062
Target:  5'- gAUACCGCGagacgcUCGCGGCcagcGAAAGugCUc -3'
miRNA:   3'- -UGUGGCGC------AGCGUCGca--CUUUCugGA- -5'
27573 3' -55.4 NC_005882.1 + 30134 0.69 0.412982
Target:  5'- aACGCCGaCGUCGCcuuucGCGgUGAcgccguAGACCUg -3'
miRNA:   3'- -UGUGGC-GCAGCGu----CGC-ACUu-----UCUGGA- -5'
27573 3' -55.4 NC_005882.1 + 22421 0.7 0.348949
Target:  5'- aGC-CCGCG-CGCcccAGCGUGccgGAAGACCa -3'
miRNA:   3'- -UGuGGCGCaGCG---UCGCAC---UUUCUGGa -5'
27573 3' -55.4 NC_005882.1 + 7252 0.75 0.179915
Target:  5'- gGCGaacaUGCGUCGUAGUGUGGAAGcguGCCUg -3'
miRNA:   3'- -UGUg---GCGCAGCGUCGCACUUUC---UGGA- -5'
27573 3' -55.4 NC_005882.1 + 8902 1.07 0.000789
Target:  5'- gACACCGCGUCGCAGCGUGAAAGACCUc -3'
miRNA:   3'- -UGUGGCGCAGCGUCGCACUUUCUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.