miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27573 5' -52.3 NC_005882.1 + 5122 0.68 0.632393
Target:  5'- uGCGGCaGUcUCGGCauagccgaaauCGCCACGUaCGAUg -3'
miRNA:   3'- -CGUUGaCAaAGCCG-----------GUGGUGCA-GCUG- -5'
27573 5' -52.3 NC_005882.1 + 31961 0.69 0.620864
Target:  5'- cCGACgagcGUcggCGGCCGCUgaccgauuACGUCGACg -3'
miRNA:   3'- cGUUGa---CAaa-GCCGGUGG--------UGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 8141 0.69 0.609347
Target:  5'- uGCAugUc-UUCGGCCGUCGCGUCG-Cg -3'
miRNA:   3'- -CGUugAcaAAGCCGGUGGUGCAGCuG- -5'
27573 5' -52.3 NC_005882.1 + 20388 0.69 0.609347
Target:  5'- cGCAACUGgaucgcUUCGGUCGCUgucuggACGgCGGCu -3'
miRNA:   3'- -CGUUGACa-----AAGCCGGUGG------UGCaGCUG- -5'
27573 5' -52.3 NC_005882.1 + 25643 0.69 0.585242
Target:  5'- cGCGACgg---CGGCUGCCACGgccgcgcccguaaUCGGCg -3'
miRNA:   3'- -CGUUGacaaaGCCGGUGGUGC-------------AGCUG- -5'
27573 5' -52.3 NC_005882.1 + 15980 0.69 0.574964
Target:  5'- cGCgAGCUGcgcgCGGaCGCgCACGUCGGCg -3'
miRNA:   3'- -CG-UUGACaaa-GCCgGUG-GUGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 17165 0.69 0.572686
Target:  5'- aGCGGCgcgaccaGcGCCugCGCGUCGGCa -3'
miRNA:   3'- -CGUUGacaaag-C-CGGugGUGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 19982 0.69 0.563594
Target:  5'- -----cGUUcgCGGCCGCCGCGuaaUCGACc -3'
miRNA:   3'- cguugaCAAa-GCCGGUGGUGC---AGCUG- -5'
27573 5' -52.3 NC_005882.1 + 26649 0.7 0.552284
Target:  5'- uGCGuCUGaaagCGGCC-CCACG-CGACg -3'
miRNA:   3'- -CGUuGACaaa-GCCGGuGGUGCaGCUG- -5'
27573 5' -52.3 NC_005882.1 + 22713 0.71 0.495852
Target:  5'- gGCgAGCUGcg--GGCCgaacugcGCCGCGUCGACg -3'
miRNA:   3'- -CG-UUGACaaagCCGG-------UGGUGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 3554 0.71 0.486156
Target:  5'- aGCAGCgacaccGUUUCGGCacgAUCGCGUCG-Cg -3'
miRNA:   3'- -CGUUGa-----CAAAGCCGg--UGGUGCAGCuG- -5'
27573 5' -52.3 NC_005882.1 + 12596 0.71 0.486156
Target:  5'- cGCAGCgc---CGGCCGCCGcCG-CGACa -3'
miRNA:   3'- -CGUUGacaaaGCCGGUGGU-GCaGCUG- -5'
27573 5' -52.3 NC_005882.1 + 14198 0.72 0.424025
Target:  5'- gGCAcgcGCggaagCGGCCGCCGCGgccgUCGACa -3'
miRNA:   3'- -CGU---UGacaaaGCCGGUGGUGC----AGCUG- -5'
27573 5' -52.3 NC_005882.1 + 13079 0.72 0.424025
Target:  5'- cGCGGCUG---CGGCgGCUgGCGUCGACg -3'
miRNA:   3'- -CGUUGACaaaGCCGgUGG-UGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 12999 0.72 0.414136
Target:  5'- aCGACauccUCGcCCACCACGUCGACg -3'
miRNA:   3'- cGUUGacaaAGCcGGUGGUGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 8625 0.75 0.30248
Target:  5'- uCGACUua-UCGGCCACCuggaggaacagggcuGCGUCGACg -3'
miRNA:   3'- cGUUGAcaaAGCCGGUGG---------------UGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 21566 0.77 0.222141
Target:  5'- aGCGGCagGUUguagCGGCCGCgcaagugCGCGUCGACg -3'
miRNA:   3'- -CGUUGa-CAAa---GCCGGUG-------GUGCAGCUG- -5'
27573 5' -52.3 NC_005882.1 + 8868 1.13 0.000695
Target:  5'- uGCAACUGUUUCGGCCACCACGUCGACa -3'
miRNA:   3'- -CGUUGACAAAGCCGGUGGUGCAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.