Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27575 | 5' | -55.8 | NC_005882.1 | + | 9441 | 1.14 | 0.0003 |
Target: 5'- cCCGACGAUGUACUGGACGUCCGCCCCg -3' miRNA: 3'- -GGCUGCUACAUGACCUGCAGGCGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 25258 | 0.75 | 0.18694 |
Target: 5'- uUCGGCGAUGgACUGGAUGUUCaugagcgGCCUCg -3' miRNA: 3'- -GGCUGCUACaUGACCUGCAGG-------CGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 19711 | 0.72 | 0.322744 |
Target: 5'- gCGACGAcugcauccuUGUGCUucgGGGCGagcgugCCGCCCUu -3' miRNA: 3'- gGCUGCU---------ACAUGA---CCUGCa-----GGCGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 31947 | 0.71 | 0.330734 |
Target: 5'- gUCGACGAgcggGUAgacCUGGACG-CUGCCUg -3' miRNA: 3'- -GGCUGCUa---CAU---GACCUGCaGGCGGGg -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 16139 | 0.71 | 0.338868 |
Target: 5'- aCCGA-GAU--GCUGGACG-CCGUCCUg -3' miRNA: 3'- -GGCUgCUAcaUGACCUGCaGGCGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 2240 | 0.7 | 0.418442 |
Target: 5'- aUCGACGA-GUGCcuucgcgauUGGACGacggacgCaCGCCCCg -3' miRNA: 3'- -GGCUGCUaCAUG---------ACCUGCa------G-GCGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 28346 | 0.7 | 0.418442 |
Target: 5'- aCCGcCGAUGUgacGCUGGA-GaCCGCCUg -3' miRNA: 3'- -GGCuGCUACA---UGACCUgCaGGCGGGg -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 36596 | 0.69 | 0.427962 |
Target: 5'- gCUGACGAUG-ACgaaGGACGUcCCGUaCCUg -3' miRNA: 3'- -GGCUGCUACaUGa--CCUGCA-GGCG-GGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 1583 | 0.69 | 0.427962 |
Target: 5'- cUCGACGAU-UACUugacGGCGUCCuucaGCCCCu -3' miRNA: 3'- -GGCUGCUAcAUGAc---CUGCAGG----CGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 12076 | 0.69 | 0.437609 |
Target: 5'- aCGACGAg--ACUGG-CGcaUCCauGCCCCa -3' miRNA: 3'- gGCUGCUacaUGACCuGC--AGG--CGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 23249 | 0.68 | 0.512567 |
Target: 5'- gCCGAucggcgcauCGAUGUacgcgaucgccccgaGCUGGACGgccaUCGCCuCCa -3' miRNA: 3'- -GGCU---------GCUACA---------------UGACCUGCa---GGCGG-GG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 27720 | 0.68 | 0.518887 |
Target: 5'- gCCGGCuaccGAUGcGCcagccGGCGaUCCGCCCCg -3' miRNA: 3'- -GGCUG----CUACaUGac---CUGC-AGGCGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 24897 | 0.67 | 0.540166 |
Target: 5'- cUCGGCGGcUGaucGCUGGGCGcCCGCauuuCCg -3' miRNA: 3'- -GGCUGCU-ACa--UGACCUGCaGGCGg---GG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 3176 | 0.67 | 0.550916 |
Target: 5'- aCUGACGAuugccuUGccGCUGGACagugacgCCGCCCg -3' miRNA: 3'- -GGCUGCU------ACa-UGACCUGca-----GGCGGGg -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 14820 | 0.67 | 0.566074 |
Target: 5'- aCGGCGucgacaacgcguucaAUGaGCUggucacGGACGUCCGUUCCg -3' miRNA: 3'- gGCUGC---------------UACaUGA------CCUGCAGGCGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 13995 | 0.66 | 0.616495 |
Target: 5'- gCgGACGAU---CaGGACGcCCGCUCCg -3' miRNA: 3'- -GgCUGCUAcauGaCCUGCaGGCGGGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 17681 | 0.66 | 0.63856 |
Target: 5'- gUCGACGAUcggccGUACUGGAUGUaCGUggcgaUCCu -3' miRNA: 3'- -GGCUGCUA-----CAUGACCUGCAgGCG-----GGG- -5' |
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27575 | 5' | -55.8 | NC_005882.1 | + | 12912 | 0.66 | 0.649588 |
Target: 5'- gCCGAUGGUGUGCccGcGACcagugCUGCCgCCg -3' miRNA: 3'- -GGCUGCUACAUGa-C-CUGca---GGCGG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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