miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27576 5' -60.4 NC_005882.1 + 25642 0.73 0.120706
Target:  5'- aCGCGaCGGCGG-CUGCCaCGGCCGcGCc -3'
miRNA:   3'- -GCGCaGCCGCUaGACGG-GCUGGU-CGa -5'
27576 5' -60.4 NC_005882.1 + 31967 0.66 0.369642
Target:  5'- aGCGUCGGCGGccgCUGaCCGAUUAcGUc -3'
miRNA:   3'- gCGCAGCCGCUa--GACgGGCUGGU-CGa -5'
27576 5' -60.4 NC_005882.1 + 26007 0.66 0.361069
Target:  5'- gCGCGgccuaCGGCGGcaaGCUCGGCCGGUUc -3'
miRNA:   3'- -GCGCa----GCCGCUagaCGGGCUGGUCGA- -5'
27576 5' -60.4 NC_005882.1 + 25827 0.66 0.352636
Target:  5'- gGCGUCGGCacaCUGgUCGcuGCCGGCa -3'
miRNA:   3'- gCGCAGCCGcuaGACgGGC--UGGUCGa -5'
27576 5' -60.4 NC_005882.1 + 24402 0.66 0.336193
Target:  5'- cCGCGUCGGCGGcgaagacaugCUGgCUGACUuccGCg -3'
miRNA:   3'- -GCGCAGCCGCUa---------GACgGGCUGGu--CGa -5'
27576 5' -60.4 NC_005882.1 + 21902 0.67 0.320315
Target:  5'- uGCGaUCGGCGcgUUGCUgG-UCAGCUa -3'
miRNA:   3'- gCGC-AGCCGCuaGACGGgCuGGUCGA- -5'
27576 5' -60.4 NC_005882.1 + 22723 0.67 0.31259
Target:  5'- aGCGggaCGGUGAUCgugaucaacgUGCUCGACCcGGCc -3'
miRNA:   3'- gCGCa--GCCGCUAG----------ACGGGCUGG-UCGa -5'
27576 5' -60.4 NC_005882.1 + 403 0.67 0.305007
Target:  5'- gGCGagCGGCGAUCUccucgcGCCgGACC-GCc -3'
miRNA:   3'- gCGCa-GCCGCUAGA------CGGgCUGGuCGa -5'
27576 5' -60.4 NC_005882.1 + 22571 0.67 0.305007
Target:  5'- aGuCGgCGGUGAUCgGCuuGAUCGGCa -3'
miRNA:   3'- gC-GCaGCCGCUAGaCGggCUGGUCGa -5'
27576 5' -60.4 NC_005882.1 + 34779 0.68 0.276089
Target:  5'- aCGUGUacagCGGCGccaacaUGCCCG-CCGGCUa -3'
miRNA:   3'- -GCGCA----GCCGCuag---ACGGGCuGGUCGA- -5'
27576 5' -60.4 NC_005882.1 + 23748 0.72 0.138633
Target:  5'- gGCGaCGGCGcgCUGCUCGGCUucaaGGCa -3'
miRNA:   3'- gCGCaGCCGCuaGACGGGCUGG----UCGa -5'
27576 5' -60.4 NC_005882.1 + 3283 0.71 0.167841
Target:  5'- uCGCG-CGGCGAgaUCUcUUCGGCCAGCa -3'
miRNA:   3'- -GCGCaGCCGCU--AGAcGGGCUGGUCGa -5'
27576 5' -60.4 NC_005882.1 + 29992 0.69 0.213411
Target:  5'- aGCGcUCGGCGcUCgccGUCCaGGCCGGCa -3'
miRNA:   3'- gCGC-AGCCGCuAGa--CGGG-CUGGUCGa -5'
27576 5' -60.4 NC_005882.1 + 6371 0.69 0.213411
Target:  5'- cCGCGUCGuaGAUCgcaccuuuuuUGCCgUGGCCGGCc -3'
miRNA:   3'- -GCGCAGCcgCUAG----------ACGG-GCUGGUCGa -5'
27576 5' -60.4 NC_005882.1 + 27561 0.68 0.243074
Target:  5'- gCGCucGUCGGCGGUC-GCCgCGcgcgcggccGCCGGCa -3'
miRNA:   3'- -GCG--CAGCCGCUAGaCGG-GC---------UGGUCGa -5'
27576 5' -60.4 NC_005882.1 + 19394 0.68 0.262471
Target:  5'- cCGCGaagUCGcGCGAcaagacgaUGCgCCGACCAGCg -3'
miRNA:   3'- -GCGC---AGC-CGCUag------ACG-GGCUGGUCGa -5'
27576 5' -60.4 NC_005882.1 + 14420 0.66 0.33137
Target:  5'- aCGUGUCGGCGcaccauuUCUGCUgauacggcagcaggaCGGCgGGCg -3'
miRNA:   3'- -GCGCAGCCGCu------AGACGG---------------GCUGgUCGa -5'
27576 5' -60.4 NC_005882.1 + 25136 0.73 0.11641
Target:  5'- uCGCGgCGGCGAUCaagGCCaucguguggcuuugCGGCCGGCUc -3'
miRNA:   3'- -GCGCaGCCGCUAGa--CGG--------------GCUGGUCGA- -5'
27576 5' -60.4 NC_005882.1 + 19596 0.73 0.120706
Target:  5'- gCGCGUCGGCGAgcugCUGCuuGAgcuggguguuuUCGGCc -3'
miRNA:   3'- -GCGCAGCCGCUa---GACGggCU-----------GGUCGa -5'
27576 5' -60.4 NC_005882.1 + 15925 0.7 0.197145
Target:  5'- cCGCGUC-GCGAUCUGCgaCGAaagcgacuuguCCGGCUc -3'
miRNA:   3'- -GCGCAGcCGCUAGACGg-GCU-----------GGUCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.