miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27577 5' -59 NC_005882.1 + 8160 0.66 0.393398
Target:  5'- cGUCGCgGCCGgucgggAUgucgaugaucagccgACCGGcGCUUGCCGc -3'
miRNA:   3'- -UAGCG-CGGUa-----UG---------------UGGCC-CGAACGGCa -5'
27577 5' -59 NC_005882.1 + 22988 0.66 0.389715
Target:  5'- aAUCGUGCCGguuUugAuCCGGGUgaugacGCCGUu -3'
miRNA:   3'- -UAGCGCGGU---AugU-GGCCCGaa----CGGCA- -5'
27577 5' -59 NC_005882.1 + 6649 0.66 0.380606
Target:  5'- -gCGCGCCGUGCGuCUcGGCgUGCUGc -3'
miRNA:   3'- uaGCGCGGUAUGU-GGcCCGaACGGCa -5'
27577 5' -59 NC_005882.1 + 10832 0.66 0.36282
Target:  5'- gGUCGCGCuCGUcGCugCgGGGCUcgugacggUGCUGUc -3'
miRNA:   3'- -UAGCGCG-GUA-UGugG-CCCGA--------ACGGCA- -5'
27577 5' -59 NC_005882.1 + 6176 0.66 0.361946
Target:  5'- -cCGCGUCAccgaccgUAUACaGGcGCUUGCCGUu -3'
miRNA:   3'- uaGCGCGGU-------AUGUGgCC-CGAACGGCA- -5'
27577 5' -59 NC_005882.1 + 29983 0.68 0.282768
Target:  5'- uGUCGCGCCgacucgaugagGUAUuuGCCGGacaGUUUGCCGa -3'
miRNA:   3'- -UAGCGCGG-----------UAUG--UGGCC---CGAACGGCa -5'
27577 5' -59 NC_005882.1 + 32161 0.68 0.280596
Target:  5'- aGUCGCGCCGUGCAgguucaGGGCgUguacgacguugaccUGCCGg -3'
miRNA:   3'- -UAGCGCGGUAUGUgg----CCCG-A--------------ACGGCa -5'
27577 5' -59 NC_005882.1 + 1548 0.69 0.241825
Target:  5'- gGUCGaCGCCcaucGCAUCGGGCgucGCCGc -3'
miRNA:   3'- -UAGC-GCGGua--UGUGGCCCGaa-CGGCa -5'
27577 5' -59 NC_005882.1 + 30266 0.69 0.238015
Target:  5'- gGUCGgucaGCCGUACgcgcgcgaaGCCGGGCUucgacgcacugaccgUGCCGa -3'
miRNA:   3'- -UAGCg---CGGUAUG---------UGGCCCGA---------------ACGGCa -5'
27577 5' -59 NC_005882.1 + 12587 0.7 0.211586
Target:  5'- gGUCGCuuucuucggcgGCUAUcACGCCGGugcGCUUGCCGg -3'
miRNA:   3'- -UAGCG-----------CGGUA-UGUGGCC---CGAACGGCa -5'
27577 5' -59 NC_005882.1 + 15606 0.7 0.211586
Target:  5'- -gCGCGCCGUACAgguCaucaaGGGCgUGCCGc -3'
miRNA:   3'- uaGCGCGGUAUGU---Gg----CCCGaACGGCa -5'
27577 5' -59 NC_005882.1 + 23220 0.7 0.195047
Target:  5'- cUCGCGCag-GCgcugGCCGGGCgcggGCCGg -3'
miRNA:   3'- uAGCGCGguaUG----UGGCCCGaa--CGGCa -5'
27577 5' -59 NC_005882.1 + 28018 0.71 0.169991
Target:  5'- uGUCGC-CCAUGCguugcaGCCGcGGCUUGCCc- -3'
miRNA:   3'- -UAGCGcGGUAUG------UGGC-CCGAACGGca -5'
27577 5' -59 NC_005882.1 + 26965 0.72 0.143754
Target:  5'- uUCGCgGCCGUG-AUCGGGCgUGCCGg -3'
miRNA:   3'- uAGCG-CGGUAUgUGGCCCGaACGGCa -5'
27577 5' -59 NC_005882.1 + 10424 1.05 0.000448
Target:  5'- gAUCGCGCCAUACACCGGGCUUGCCGUc -3'
miRNA:   3'- -UAGCGCGGUAUGUGGCCCGAACGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.