miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27578 3' -54.9 NC_005882.1 + 1598 0.66 0.652369
Target:  5'- --cGAUgGgCGUCGACCCGugcggcGAUCGa -3'
miRNA:   3'- cauCUGgCgGCAGCUGGGCuu----CUAGU- -5'
27578 3' -54.9 NC_005882.1 + 16095 0.66 0.634298
Target:  5'- --cGAUCGCCGacgucuucgcggaccUCGACCUGucucGGAUCGu -3'
miRNA:   3'- cauCUGGCGGC---------------AGCUGGGCu---UCUAGU- -5'
27578 3' -54.9 NC_005882.1 + 29237 0.66 0.607194
Target:  5'- ---aACCGCCGUCGACCgUGAcaAUCc -3'
miRNA:   3'- caucUGGCGGCAGCUGG-GCUucUAGu -5'
27578 3' -54.9 NC_005882.1 + 4881 0.67 0.597056
Target:  5'- -aAGGCCGCUGUCGAagcugccggcgucgaCUGGAGcgCGg -3'
miRNA:   3'- caUCUGGCGGCAGCUg--------------GGCUUCuaGU- -5'
27578 3' -54.9 NC_005882.1 + 12892 0.67 0.595931
Target:  5'- uGUGGaacGCCGCCGcCGGCgCCGAuGGUg- -3'
miRNA:   3'- -CAUC---UGGCGGCaGCUG-GGCUuCUAgu -5'
27578 3' -54.9 NC_005882.1 + 32016 0.67 0.595931
Target:  5'- --cGGCCGCCGaCG-CUCGucGGUCAg -3'
miRNA:   3'- cauCUGGCGGCaGCuGGGCuuCUAGU- -5'
27578 3' -54.9 NC_005882.1 + 22750 0.67 0.595931
Target:  5'- cGUAGACCG-CGUCGagcGCuuGcGGGAUCGu -3'
miRNA:   3'- -CAUCUGGCgGCAGC---UGggC-UUCUAGU- -5'
27578 3' -54.9 NC_005882.1 + 27616 0.67 0.573512
Target:  5'- cGgcGACCGCCGaCGagcGCCCGAugccGAUUg -3'
miRNA:   3'- -CauCUGGCGGCaGC---UGGGCUu---CUAGu -5'
27578 3' -54.9 NC_005882.1 + 23454 0.67 0.573512
Target:  5'- --cGGCCGCUGUCGGCgaugaUCGAcGAUCc -3'
miRNA:   3'- cauCUGGCGGCAGCUG-----GGCUuCUAGu -5'
27578 3' -54.9 NC_005882.1 + 30251 0.68 0.507729
Target:  5'- --uGGCUGCCGaUCGcguACCCGAAGAc-- -3'
miRNA:   3'- cauCUGGCGGC-AGC---UGGGCUUCUagu -5'
27578 3' -54.9 NC_005882.1 + 20967 0.68 0.507729
Target:  5'- --cGAUCaGCCGUUGauGCCCG-AGAUCAg -3'
miRNA:   3'- cauCUGG-CGGCAGC--UGGGCuUCUAGU- -5'
27578 3' -54.9 NC_005882.1 + 14212 0.69 0.445355
Target:  5'- --cGGCCGCCG-CGGCCguCGAcaAGGUCGu -3'
miRNA:   3'- cauCUGGCGGCaGCUGG--GCU--UCUAGU- -5'
27578 3' -54.9 NC_005882.1 + 25513 0.69 0.425528
Target:  5'- aGUAcGACCGCC-UCGGCCgGAcaaucGAUCAg -3'
miRNA:   3'- -CAU-CUGGCGGcAGCUGGgCUu----CUAGU- -5'
27578 3' -54.9 NC_005882.1 + 3274 0.7 0.406235
Target:  5'- --cGGCCGCCGUCG-CgCGGcgAGAUCu -3'
miRNA:   3'- cauCUGGCGGCAGCuGgGCU--UCUAGu -5'
27578 3' -54.9 NC_005882.1 + 30491 0.7 0.396798
Target:  5'- -cAGACCGUgauCGUCGAUUCGAAG-UCGg -3'
miRNA:   3'- caUCUGGCG---GCAGCUGGGCUUCuAGU- -5'
27578 3' -54.9 NC_005882.1 + 4051 0.73 0.279493
Target:  5'- --uGGCCGCCGU-GGCCCcgcuggaGAAGGUCAa -3'
miRNA:   3'- cauCUGGCGGCAgCUGGG-------CUUCUAGU- -5'
27578 3' -54.9 NC_005882.1 + 23010 0.75 0.197922
Target:  5'- --uGGCCGCCGUCGcACCCGgcGGaaUCGu -3'
miRNA:   3'- cauCUGGCGGCAGC-UGGGCuuCU--AGU- -5'
27578 3' -54.9 NC_005882.1 + 10841 1.08 0.000774
Target:  5'- cGUAGACCGCCGUCGACCCGAAGAUCAc -3'
miRNA:   3'- -CAUCUGGCGGCAGCUGGGCUUCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.