miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27579 3' -57.4 NC_005882.1 + 21237 0.66 0.496732
Target:  5'- cCGgUGCGcCGG--CCAUGACCAGGa- -3'
miRNA:   3'- -GCgACGCuGCUugGGUGCUGGUCCaa -5'
27579 3' -57.4 NC_005882.1 + 13076 0.66 0.46561
Target:  5'- gGCUGCGGCGGcuGgCguCGACguGGUg -3'
miRNA:   3'- gCGACGCUGCU--UgGguGCUGguCCAa -5'
27579 3' -57.4 NC_005882.1 + 27672 0.66 0.46561
Target:  5'- gCGCUGC-AgGGACgCCGCGGCCGcGGc- -3'
miRNA:   3'- -GCGACGcUgCUUG-GGUGCUGGU-CCaa -5'
27579 3' -57.4 NC_005882.1 + 12553 0.66 0.444437
Target:  5'- gCGCUGCGGCGAucggcgcACUgGCGGCUGGc-- -3'
miRNA:   3'- -GCGACGCUGCU-------UGGgUGCUGGUCcaa -5'
27579 3' -57.4 NC_005882.1 + 31829 0.67 0.435531
Target:  5'- gCGCUcuugGCGugGAACacguaCGCGAgCCGGGa- -3'
miRNA:   3'- -GCGA----CGCugCUUGg----GUGCU-GGUCCaa -5'
27579 3' -57.4 NC_005882.1 + 5267 0.67 0.435531
Target:  5'- gGC-GUGACGAugCCGC--CCAGGUg -3'
miRNA:   3'- gCGaCGCUGCUugGGUGcuGGUCCAa -5'
27579 3' -57.4 NC_005882.1 + 23358 0.67 0.404719
Target:  5'- uCGCgUGCGGCGGGCCUucgcgcacguguCGACCuGGa- -3'
miRNA:   3'- -GCG-ACGCUGCUUGGGu-----------GCUGGuCCaa -5'
27579 3' -57.4 NC_005882.1 + 28712 0.67 0.397234
Target:  5'- gCGCUGCucgccguCGAgagcugGCCCGCGGCCcGGUc -3'
miRNA:   3'- -GCGACGcu-----GCU------UGGGUGCUGGuCCAa -5'
27579 3' -57.4 NC_005882.1 + 2082 0.67 0.397234
Target:  5'- gCGCaGCG-CGAGCaCGCGGCCGGuGUUg -3'
miRNA:   3'- -GCGaCGCuGCUUGgGUGCUGGUC-CAA- -5'
27579 3' -57.4 NC_005882.1 + 12904 0.69 0.296119
Target:  5'- cCGCcgGCGcCGAugguguGCCCGCGACCAGu-- -3'
miRNA:   3'- -GCGa-CGCuGCU------UGGGUGCUGGUCcaa -5'
27579 3' -57.4 NC_005882.1 + 10939 1.06 0.000601
Target:  5'- gCGCUGCGACGAACCCACGACCAGGUUg -3'
miRNA:   3'- -GCGACGCUGCUUGGGUGCUGGUCCAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.