Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27579 | 3' | -57.4 | NC_005882.1 | + | 21237 | 0.66 | 0.496732 |
Target: 5'- cCGgUGCGcCGG--CCAUGACCAGGa- -3' miRNA: 3'- -GCgACGCuGCUugGGUGCUGGUCCaa -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 13076 | 0.66 | 0.46561 |
Target: 5'- gGCUGCGGCGGcuGgCguCGACguGGUg -3' miRNA: 3'- gCGACGCUGCU--UgGguGCUGguCCAa -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 27672 | 0.66 | 0.46561 |
Target: 5'- gCGCUGC-AgGGACgCCGCGGCCGcGGc- -3' miRNA: 3'- -GCGACGcUgCUUG-GGUGCUGGU-CCaa -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 12553 | 0.66 | 0.444437 |
Target: 5'- gCGCUGCGGCGAucggcgcACUgGCGGCUGGc-- -3' miRNA: 3'- -GCGACGCUGCU-------UGGgUGCUGGUCcaa -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 31829 | 0.67 | 0.435531 |
Target: 5'- gCGCUcuugGCGugGAACacguaCGCGAgCCGGGa- -3' miRNA: 3'- -GCGA----CGCugCUUGg----GUGCU-GGUCCaa -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 5267 | 0.67 | 0.435531 |
Target: 5'- gGC-GUGACGAugCCGC--CCAGGUg -3' miRNA: 3'- gCGaCGCUGCUugGGUGcuGGUCCAa -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 28712 | 0.67 | 0.397234 |
Target: 5'- gCGCUGCucgccguCGAgagcugGCCCGCGGCCcGGUc -3' miRNA: 3'- -GCGACGcu-----GCU------UGGGUGCUGGuCCAa -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 23358 | 0.67 | 0.404719 |
Target: 5'- uCGCgUGCGGCGGGCCUucgcgcacguguCGACCuGGa- -3' miRNA: 3'- -GCG-ACGCUGCUUGGGu-----------GCUGGuCCaa -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 2082 | 0.67 | 0.397234 |
Target: 5'- gCGCaGCG-CGAGCaCGCGGCCGGuGUUg -3' miRNA: 3'- -GCGaCGCuGCUUGgGUGCUGGUC-CAA- -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 12904 | 0.69 | 0.296119 |
Target: 5'- cCGCcgGCGcCGAugguguGCCCGCGACCAGu-- -3' miRNA: 3'- -GCGa-CGCuGCU------UGGGUGCUGGUCcaa -5' |
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27579 | 3' | -57.4 | NC_005882.1 | + | 10939 | 1.06 | 0.000601 |
Target: 5'- gCGCUGCGACGAACCCACGACCAGGUUg -3' miRNA: 3'- -GCGACGCUGCUUGGGUGCUGGUCCAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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