miRNA display CGI


Results 1 - 20 of 38 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27579 5' -60.9 NC_005882.1 + 26639 0.66 0.339665
Target:  5'- aGCGGCcccacgcgACgGUCGCcAGCUCCGC-GCGg -3'
miRNA:   3'- -UGUCG--------UGgCAGUGcUCGGGGCGuCGC- -5'
27579 5' -60.9 NC_005882.1 + 3273 0.66 0.334796
Target:  5'- cCGGcCGCCGUCGCGcggcgagaucucuucGGCCagcaCGCGGUa -3'
miRNA:   3'- uGUC-GUGGCAGUGC---------------UCGGg---GCGUCGc -5'
27579 5' -60.9 NC_005882.1 + 22451 0.66 0.323633
Target:  5'- gACGGCGCUGcggccggcuUCAgGuAGCCCaucgcgaGCAGCGu -3'
miRNA:   3'- -UGUCGUGGC---------AGUgC-UCGGGg------CGUCGC- -5'
27579 5' -60.9 NC_005882.1 + 11629 0.66 0.323633
Target:  5'- cGCAGCAacugcCCGUCGCccucuacaaacuGAGUCUCGuCAGCc -3'
miRNA:   3'- -UGUCGU-----GGCAGUG------------CUCGGGGC-GUCGc -5'
27579 5' -60.9 NC_005882.1 + 15542 0.66 0.322847
Target:  5'- gACAGCaucacuuGCUGgaugCGCGAuGCgCCGUAGCGc -3'
miRNA:   3'- -UGUCG-------UGGCa---GUGCU-CGgGGCGUCGC- -5'
27579 5' -60.9 NC_005882.1 + 24300 0.66 0.322847
Target:  5'- cACGGuCAgguaCGUCACGAGacugacuUCCCGCAcGCGg -3'
miRNA:   3'- -UGUC-GUg---GCAGUGCUC-------GGGGCGU-CGC- -5'
27579 5' -60.9 NC_005882.1 + 11928 0.66 0.308173
Target:  5'- uCGGCGCCGcCGCGcccguGGCCgCGCAaGUGc -3'
miRNA:   3'- uGUCGUGGCaGUGC-----UCGGgGCGU-CGC- -5'
27579 5' -60.9 NC_005882.1 + 8742 0.66 0.300657
Target:  5'- aGCAGCGCCGaaACGAcgcaGCgCCUGCgaaaAGCGu -3'
miRNA:   3'- -UGUCGUGGCagUGCU----CG-GGGCG----UCGC- -5'
27579 5' -60.9 NC_005882.1 + 23425 0.66 0.293283
Target:  5'- aGCAGCucgucGgCGUCACGGGCgUCG-AGCGg -3'
miRNA:   3'- -UGUCG-----UgGCAGUGCUCGgGGCgUCGC- -5'
27579 5' -60.9 NC_005882.1 + 23083 0.66 0.293283
Target:  5'- cCGGCugCGuUCACGGcGCCgaugauguCCGCGGCc -3'
miRNA:   3'- uGUCGugGC-AGUGCU-CGG--------GGCGUCGc -5'
27579 5' -60.9 NC_005882.1 + 14531 0.67 0.27896
Target:  5'- gACuGCGCCGaCugGgccaaguucuacAGCCUCGCGGCc -3'
miRNA:   3'- -UGuCGUGGCaGugC------------UCGGGGCGUCGc -5'
27579 5' -60.9 NC_005882.1 + 34642 0.67 0.27896
Target:  5'- cGCGGCACCG-C-CGAGCgCCGUcuCGa -3'
miRNA:   3'- -UGUCGUGGCaGuGCUCGgGGCGucGC- -5'
27579 5' -60.9 NC_005882.1 + 11996 0.67 0.27201
Target:  5'- gGCAcuuGCGCgGcCACGGGCgCgGCGGCGc -3'
miRNA:   3'- -UGU---CGUGgCaGUGCUCGgGgCGUCGC- -5'
27579 5' -60.9 NC_005882.1 + 4794 0.67 0.257869
Target:  5'- aGCAGCucgacgcgAUCGUCGcCGAGCuuaccggCCCGCgAGCGg -3'
miRNA:   3'- -UGUCG--------UGGCAGU-GCUCG-------GGGCG-UCGC- -5'
27579 5' -60.9 NC_005882.1 + 9051 0.67 0.251995
Target:  5'- -aAGCuCCG-CGCGGGCUUCaGCGGCGg -3'
miRNA:   3'- ugUCGuGGCaGUGCUCGGGG-CGUCGC- -5'
27579 5' -60.9 NC_005882.1 + 27618 0.67 0.251995
Target:  5'- cGCGGCgACCGcCgACGAGCgCCCgaugccgauuGCGGCGc -3'
miRNA:   3'- -UGUCG-UGGCaG-UGCUCG-GGG----------CGUCGC- -5'
27579 5' -60.9 NC_005882.1 + 31461 0.68 0.233208
Target:  5'- cGCAGCGUCGUCuucGCGGGCUgCGcCGGCa -3'
miRNA:   3'- -UGUCGUGGCAG---UGCUCGGgGC-GUCGc -5'
27579 5' -60.9 NC_005882.1 + 17879 0.68 0.227212
Target:  5'- gACAGCGCCacCACGcGGCaCCgGCAGCc -3'
miRNA:   3'- -UGUCGUGGcaGUGC-UCG-GGgCGUCGc -5'
27579 5' -60.9 NC_005882.1 + 28711 0.68 0.221348
Target:  5'- cGCuGCucGCCGUCGaGAGCuggCCCGCGGCc -3'
miRNA:   3'- -UGuCG--UGGCAGUgCUCG---GGGCGUCGc -5'
27579 5' -60.9 NC_005882.1 + 15670 0.68 0.215613
Target:  5'- gACGGCAagCGcCACGGcgacGCCgCCGUAGCGg -3'
miRNA:   3'- -UGUCGUg-GCaGUGCU----CGG-GGCGUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.