miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2758 3' -60 NC_001491.2 + 77691 0.66 0.757836
Target:  5'- cGCGCuaacUGGCCuagcGCUaaUGGCGCGugGGg- -3'
miRNA:   3'- -UGCG----ACCGGu---UGA--GCCGCGCugUCgc -5'
2758 3' -60 NC_001491.2 + 146523 0.66 0.757836
Target:  5'- gGCGCccUGGUCcccggAGCggccgCGGcCGCGGCAGCc -3'
miRNA:   3'- -UGCG--ACCGG-----UUGa----GCC-GCGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 138498 0.66 0.748452
Target:  5'- cGCGCUG-CUGGCaUCGGCGgCGuCGGCc -3'
miRNA:   3'- -UGCGACcGGUUG-AGCCGC-GCuGUCGc -5'
2758 3' -60 NC_001491.2 + 76110 0.66 0.748452
Target:  5'- -aGUagUGGCCAAUUauGUGCG-CAGCGa -3'
miRNA:   3'- ugCG--ACCGGUUGAgcCGCGCuGUCGC- -5'
2758 3' -60 NC_001491.2 + 147640 0.66 0.73897
Target:  5'- cCGCca-CCAGCUCGGgGgGACAGUa -3'
miRNA:   3'- uGCGaccGGUUGAGCCgCgCUGUCGc -5'
2758 3' -60 NC_001491.2 + 49475 0.66 0.7294
Target:  5'- cCGCcggGGCCGuCcCGGaCGCGgcGCAGCGg -3'
miRNA:   3'- uGCGa--CCGGUuGaGCC-GCGC--UGUCGC- -5'
2758 3' -60 NC_001491.2 + 64987 0.66 0.719749
Target:  5'- gACGgaaUGG-CAGCUCccggcaGGCGCGACAGUu -3'
miRNA:   3'- -UGCg--ACCgGUUGAG------CCGCGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 114618 0.66 0.719749
Target:  5'- cGCGC-GGCCAaccgauggggACUCGGgGCcuGGCuGCGc -3'
miRNA:   3'- -UGCGaCCGGU----------UGAGCCgCG--CUGuCGC- -5'
2758 3' -60 NC_001491.2 + 148479 0.66 0.719749
Target:  5'- cGCGCUGGCgGuacuccCUCGGagccaggggaaCGCGGguGCGc -3'
miRNA:   3'- -UGCGACCGgUu-----GAGCC-----------GCGCUguCGC- -5'
2758 3' -60 NC_001491.2 + 138291 0.66 0.710027
Target:  5'- cACGCggcacGGCaccucGCUgGGUGCGACGGgGa -3'
miRNA:   3'- -UGCGa----CCGgu---UGAgCCGCGCUGUCgC- -5'
2758 3' -60 NC_001491.2 + 1250 0.66 0.710027
Target:  5'- gGCGCgGGCCcgUgaaaaaaauuuuUCGGCcucGCGACGGCc -3'
miRNA:   3'- -UGCGaCCGGuuG------------AGCCG---CGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 54643 0.66 0.710027
Target:  5'- aGCGC-GGCCcugggaaauggcAACggCGGCaaacagagcgGCGGCAGCGg -3'
miRNA:   3'- -UGCGaCCGG------------UUGa-GCCG----------CGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 5594 0.67 0.680515
Target:  5'- uGCGCcugGGCCAACgCGGagGCGAUucgAGCu -3'
miRNA:   3'- -UGCGa--CCGGUUGaGCCg-CGCUG---UCGc -5'
2758 3' -60 NC_001491.2 + 13920 0.67 0.67059
Target:  5'- -gGCUGGCgGcCUUgGGCgGUGGCAGCGc -3'
miRNA:   3'- ugCGACCGgUuGAG-CCG-CGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 146998 0.67 0.67059
Target:  5'- cUGCUGGgaCCGAgUCGGUGgGGcCAGCa -3'
miRNA:   3'- uGCGACC--GGUUgAGCCGCgCU-GUCGc -5'
2758 3' -60 NC_001491.2 + 52937 0.67 0.660636
Target:  5'- -gGCUGGCCAuGCgaaaGGCGgUGAgGGCGc -3'
miRNA:   3'- ugCGACCGGU-UGag--CCGC-GCUgUCGC- -5'
2758 3' -60 NC_001491.2 + 13341 0.67 0.660636
Target:  5'- gACGC-GGCaucGCUCGcguGUGCGGCAGCc -3'
miRNA:   3'- -UGCGaCCGgu-UGAGC---CGCGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 37333 0.67 0.65066
Target:  5'- cGCGCcGGCCcagucuGACUCuGGaucgGUGGCAGCGu -3'
miRNA:   3'- -UGCGaCCGG------UUGAG-CCg---CGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 85985 0.67 0.65066
Target:  5'- aACGC-GGCCA---CGG-GCGGCGGCGu -3'
miRNA:   3'- -UGCGaCCGGUugaGCCgCGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 41310 0.68 0.620678
Target:  5'- uGCGCUGGCau-CUCGaucCGCGGCcuuuGCGg -3'
miRNA:   3'- -UGCGACCGguuGAGCc--GCGCUGu---CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.