miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2758 3' -60 NC_001491.2 + 146404 0.77 0.210163
Target:  5'- uUGCUGGCUGGCcgCGGCaGCGGCGGCc -3'
miRNA:   3'- uGCGACCGGUUGa-GCCG-CGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 35970 0.75 0.254144
Target:  5'- gGCcCUGGCCAGCUgcgugUGGCGUGugAGCa -3'
miRNA:   3'- -UGcGACCGGUUGA-----GCCGCGCugUCGc -5'
2758 3' -60 NC_001491.2 + 140133 0.74 0.298588
Target:  5'- uGCGC--GCCGugUCGGCGgaGGCAGCGg -3'
miRNA:   3'- -UGCGacCGGUugAGCCGCg-CUGUCGC- -5'
2758 3' -60 NC_001491.2 + 118200 0.74 0.298588
Target:  5'- gACGC-GGCCGACcCGGuCGCccucGACAGCGa -3'
miRNA:   3'- -UGCGaCCGGUUGaGCC-GCG----CUGUCGC- -5'
2758 3' -60 NC_001491.2 + 24058 0.72 0.388232
Target:  5'- gGCGCUGGCC-ACUCua-GUGGCAGCc -3'
miRNA:   3'- -UGCGACCGGuUGAGccgCGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 39936 0.72 0.402282
Target:  5'- uGCGCaacGGCCAGCUCGGaguuuggauuugccuCGACGGCGc -3'
miRNA:   3'- -UGCGa--CCGGUUGAGCCgc-------------GCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 148278 0.72 0.413242
Target:  5'- gGCGCUcccggGGCCAGCgcaCGGCGCaGGCGacccGCGg -3'
miRNA:   3'- -UGCGA-----CCGGUUGa--GCCGCG-CUGU----CGC- -5'
2758 3' -60 NC_001491.2 + 37623 0.71 0.421797
Target:  5'- gACaCUGGCCcuGACUU-GUGCGGCAGCGg -3'
miRNA:   3'- -UGcGACCGG--UUGAGcCGCGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 39470 0.71 0.457049
Target:  5'- cGCGUUuucuaacGCCAACUCuGGCGCGGCuucGCGa -3'
miRNA:   3'- -UGCGAc------CGGUUGAG-CCGCGCUGu--CGC- -5'
2758 3' -60 NC_001491.2 + 30446 0.71 0.466108
Target:  5'- gAUGCUGGCCAGagacgaaaccgUUCGGUGUGACAa-- -3'
miRNA:   3'- -UGCGACCGGUU-----------GAGCCGCGCUGUcgc -5'
2758 3' -60 NC_001491.2 + 144589 0.7 0.475258
Target:  5'- uGCGCUGGCUGGCcaUGGCGUGcUAGCu -3'
miRNA:   3'- -UGCGACCGGUUGa-GCCGCGCuGUCGc -5'
2758 3' -60 NC_001491.2 + 104199 0.7 0.493822
Target:  5'- cGCGcCUGGaauCAGCUUGGCGgUGAgAGCGg -3'
miRNA:   3'- -UGC-GACCg--GUUGAGCCGC-GCUgUCGC- -5'
2758 3' -60 NC_001491.2 + 123292 0.69 0.531889
Target:  5'- cAUGC-GGCCGcugACUCGGCGUGGgucuccacCGGCGc -3'
miRNA:   3'- -UGCGaCCGGU---UGAGCCGCGCU--------GUCGC- -5'
2758 3' -60 NC_001491.2 + 3054 0.69 0.551321
Target:  5'- cCGUUucuucGGCCAGggCGGCgaGCGACGGCGa -3'
miRNA:   3'- uGCGA-----CCGGUUgaGCCG--CGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 61109 0.69 0.561118
Target:  5'- aGCGaCUGGUCAAUggggUGGCGaaGCAGCGc -3'
miRNA:   3'- -UGC-GACCGGUUGa---GCCGCgcUGUCGC- -5'
2758 3' -60 NC_001491.2 + 123090 0.69 0.569977
Target:  5'- cCGCUGccuccGCCGACaCGGCGCGcacgaccGCGGCa -3'
miRNA:   3'- uGCGAC-----CGGUUGaGCCGCGC-------UGUCGc -5'
2758 3' -60 NC_001491.2 + 20303 0.69 0.580849
Target:  5'- cCGcCUGGCCuuuGCUCuugaGGCGCuuagGGCAGCa -3'
miRNA:   3'- uGC-GACCGGu--UGAG----CCGCG----CUGUCGc -5'
2758 3' -60 NC_001491.2 + 1840 0.68 0.597732
Target:  5'- gGCGcCUGGCacagggcuuccgagUAACUCGGUGgGGCGGUc -3'
miRNA:   3'- -UGC-GACCG--------------GUUGAGCCGCgCUGUCGc -5'
2758 3' -60 NC_001491.2 + 80534 0.68 0.610691
Target:  5'- gGCGgUGGCgGuucccGCgucCGGCGCGGCGGUu -3'
miRNA:   3'- -UGCgACCGgU-----UGa--GCCGCGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 91672 0.68 0.614684
Target:  5'- gACGCUGGCCAgggACaUUGuuuuggacagaucccGCGCGugGGUGu -3'
miRNA:   3'- -UGCGACCGGU---UG-AGC---------------CGCGCugUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.