miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2758 3' -60 NC_001491.2 + 1250 0.66 0.710027
Target:  5'- gGCGCgGGCCcgUgaaaaaaauuuuUCGGCcucGCGACGGCc -3'
miRNA:   3'- -UGCGaCCGGuuG------------AGCCG---CGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 1840 0.68 0.597732
Target:  5'- gGCGcCUGGCacagggcuuccgagUAACUCGGUGgGGCGGUc -3'
miRNA:   3'- -UGC-GACCG--------------GUUGAGCCGCgCUGUCGc -5'
2758 3' -60 NC_001491.2 + 3054 0.69 0.551321
Target:  5'- cCGUUucuucGGCCAGggCGGCgaGCGACGGCGa -3'
miRNA:   3'- uGCGA-----CCGGUUgaGCCG--CGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 5152 0.68 0.620678
Target:  5'- cACGC-GGCCGAggcugcgcgguCUCuGCGCGAC-GCGg -3'
miRNA:   3'- -UGCGaCCGGUU-----------GAGcCGCGCUGuCGC- -5'
2758 3' -60 NC_001491.2 + 5594 0.67 0.680515
Target:  5'- uGCGCcugGGCCAACgCGGagGCGAUucgAGCu -3'
miRNA:   3'- -UGCGa--CCGGUUGaGCCg-CGCUG---UCGc -5'
2758 3' -60 NC_001491.2 + 13341 0.67 0.660636
Target:  5'- gACGC-GGCaucGCUCGcguGUGCGGCAGCc -3'
miRNA:   3'- -UGCGaCCGgu-UGAGC---CGCGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 13920 0.67 0.67059
Target:  5'- -gGCUGGCgGcCUUgGGCgGUGGCAGCGc -3'
miRNA:   3'- ugCGACCGgUuGAG-CCG-CGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 20303 0.69 0.580849
Target:  5'- cCGcCUGGCCuuuGCUCuugaGGCGCuuagGGCAGCa -3'
miRNA:   3'- uGC-GACCGGu--UGAG----CCGCG----CUGUCGc -5'
2758 3' -60 NC_001491.2 + 24058 0.72 0.388232
Target:  5'- gGCGCUGGCC-ACUCua-GUGGCAGCc -3'
miRNA:   3'- -UGCGACCGGuUGAGccgCGCUGUCGc -5'
2758 3' -60 NC_001491.2 + 27344 0.68 0.61868
Target:  5'- cUGuCUGcGCCAagaaaugACUCGGCGCucguuggGGCAGCGc -3'
miRNA:   3'- uGC-GAC-CGGU-------UGAGCCGCG-------CUGUCGC- -5'
2758 3' -60 NC_001491.2 + 30446 0.71 0.466108
Target:  5'- gAUGCUGGCCAGagacgaaaccgUUCGGUGUGACAa-- -3'
miRNA:   3'- -UGCGACCGGUU-----------GAGCCGCGCUGUcgc -5'
2758 3' -60 NC_001491.2 + 35970 0.75 0.254144
Target:  5'- gGCcCUGGCCAGCUgcgugUGGCGUGugAGCa -3'
miRNA:   3'- -UGcGACCGGUUGA-----GCCGCGCugUCGc -5'
2758 3' -60 NC_001491.2 + 37333 0.67 0.65066
Target:  5'- cGCGCcGGCCcagucuGACUCuGGaucgGUGGCAGCGu -3'
miRNA:   3'- -UGCGaCCGG------UUGAG-CCg---CGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 37623 0.71 0.421797
Target:  5'- gACaCUGGCCcuGACUU-GUGCGGCAGCGg -3'
miRNA:   3'- -UGcGACCGG--UUGAGcCGCGCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 39470 0.71 0.457049
Target:  5'- cGCGUUuucuaacGCCAACUCuGGCGCGGCuucGCGa -3'
miRNA:   3'- -UGCGAc------CGGUUGAG-CCGCGCUGu--CGC- -5'
2758 3' -60 NC_001491.2 + 39936 0.72 0.402282
Target:  5'- uGCGCaacGGCCAGCUCGGaguuuggauuugccuCGACGGCGc -3'
miRNA:   3'- -UGCGa--CCGGUUGAGCCgc-------------GCUGUCGC- -5'
2758 3' -60 NC_001491.2 + 41310 0.68 0.620678
Target:  5'- uGCGCUGGCau-CUCGaucCGCGGCcuuuGCGg -3'
miRNA:   3'- -UGCGACCGguuGAGCc--GCGCUGu---CGC- -5'
2758 3' -60 NC_001491.2 + 49475 0.66 0.7294
Target:  5'- cCGCcggGGCCGuCcCGGaCGCGgcGCAGCGg -3'
miRNA:   3'- uGCGa--CCGGUuGaGCC-GCGC--UGUCGC- -5'
2758 3' -60 NC_001491.2 + 52937 0.67 0.660636
Target:  5'- -gGCUGGCCAuGCgaaaGGCGgUGAgGGCGc -3'
miRNA:   3'- ugCGACCGGU-UGag--CCGC-GCUgUCGC- -5'
2758 3' -60 NC_001491.2 + 54643 0.66 0.710027
Target:  5'- aGCGC-GGCCcugggaaauggcAACggCGGCaaacagagcgGCGGCAGCGg -3'
miRNA:   3'- -UGCGaCCGG------------UUGa-GCCG----------CGCUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.