Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2758 | 3' | -60 | NC_001491.2 | + | 148479 | 0.66 | 0.719749 |
Target: 5'- cGCGCUGGCgGuacuccCUCGGagccaggggaaCGCGGguGCGc -3' miRNA: 3'- -UGCGACCGgUu-----GAGCC-----------GCGCUguCGC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 148278 | 0.72 | 0.413242 |
Target: 5'- gGCGCUcccggGGCCAGCgcaCGGCGCaGGCGacccGCGg -3' miRNA: 3'- -UGCGA-----CCGGUUGa--GCCGCG-CUGU----CGC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 147640 | 0.66 | 0.73897 |
Target: 5'- cCGCca-CCAGCUCGGgGgGACAGUa -3' miRNA: 3'- uGCGaccGGUUGAGCCgCgCUGUCGc -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 146998 | 0.67 | 0.67059 |
Target: 5'- cUGCUGGgaCCGAgUCGGUGgGGcCAGCa -3' miRNA: 3'- uGCGACC--GGUUgAGCCGCgCU-GUCGc -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 146523 | 0.66 | 0.757836 |
Target: 5'- gGCGCccUGGUCcccggAGCggccgCGGcCGCGGCAGCc -3' miRNA: 3'- -UGCG--ACCGG-----UUGa----GCC-GCGCUGUCGc -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 146404 | 0.77 | 0.210163 |
Target: 5'- uUGCUGGCUGGCcgCGGCaGCGGCGGCc -3' miRNA: 3'- uGCGACCGGUUGa-GCCG-CGCUGUCGc -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 144589 | 0.7 | 0.475258 |
Target: 5'- uGCGCUGGCUGGCcaUGGCGUGcUAGCu -3' miRNA: 3'- -UGCGACCGGUUGa-GCCGCGCuGUCGc -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 140133 | 0.74 | 0.298588 |
Target: 5'- uGCGC--GCCGugUCGGCGgaGGCAGCGg -3' miRNA: 3'- -UGCGacCGGUugAGCCGCg-CUGUCGC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 138498 | 0.66 | 0.748452 |
Target: 5'- cGCGCUG-CUGGCaUCGGCGgCGuCGGCc -3' miRNA: 3'- -UGCGACcGGUUG-AGCCGC-GCuGUCGc -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 138291 | 0.66 | 0.710027 |
Target: 5'- cACGCggcacGGCaccucGCUgGGUGCGACGGgGa -3' miRNA: 3'- -UGCGa----CCGgu---UGAgCCGCGCUGUCgC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 123292 | 0.69 | 0.531889 |
Target: 5'- cAUGC-GGCCGcugACUCGGCGUGGgucuccacCGGCGc -3' miRNA: 3'- -UGCGaCCGGU---UGAGCCGCGCU--------GUCGC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 123090 | 0.69 | 0.569977 |
Target: 5'- cCGCUGccuccGCCGACaCGGCGCGcacgaccGCGGCa -3' miRNA: 3'- uGCGAC-----CGGUUGaGCCGCGC-------UGUCGc -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 118200 | 0.74 | 0.298588 |
Target: 5'- gACGC-GGCCGACcCGGuCGCccucGACAGCGa -3' miRNA: 3'- -UGCGaCCGGUUGaGCC-GCG----CUGUCGC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 114618 | 0.66 | 0.719749 |
Target: 5'- cGCGC-GGCCAaccgauggggACUCGGgGCcuGGCuGCGc -3' miRNA: 3'- -UGCGaCCGGU----------UGAGCCgCG--CUGuCGC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 104199 | 0.7 | 0.493822 |
Target: 5'- cGCGcCUGGaauCAGCUUGGCGgUGAgAGCGg -3' miRNA: 3'- -UGC-GACCg--GUUGAGCCGC-GCUgUCGC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 91672 | 0.68 | 0.614684 |
Target: 5'- gACGCUGGCCAgggACaUUGuuuuggacagaucccGCGCGugGGUGu -3' miRNA: 3'- -UGCGACCGGU---UG-AGC---------------CGCGCugUCGC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 85985 | 0.67 | 0.65066 |
Target: 5'- aACGC-GGCCA---CGG-GCGGCGGCGu -3' miRNA: 3'- -UGCGaCCGGUugaGCCgCGCUGUCGC- -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 80534 | 0.68 | 0.610691 |
Target: 5'- gGCGgUGGCgGuucccGCgucCGGCGCGGCGGUu -3' miRNA: 3'- -UGCgACCGgU-----UGa--GCCGCGCUGUCGc -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 77691 | 0.66 | 0.757836 |
Target: 5'- cGCGCuaacUGGCCuagcGCUaaUGGCGCGugGGg- -3' miRNA: 3'- -UGCG----ACCGGu---UGA--GCCGCGCugUCgc -5' |
|||||||
2758 | 3' | -60 | NC_001491.2 | + | 76110 | 0.66 | 0.748452 |
Target: 5'- -aGUagUGGCCAAUUauGUGCG-CAGCGa -3' miRNA: 3'- ugCG--ACCGGUUGAgcCGCGCuGUCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home