Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2758 | 3' | -60 | NC_001491.2 | + | 146404 | 0.77 | 0.210163 |
Target: 5'- uUGCUGGCUGGCcgCGGCaGCGGCGGCc -3' miRNA: 3'- uGCGACCGGUUGa-GCCG-CGCUGUCGc -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 5594 | 0.67 | 0.680515 |
Target: 5'- uGCGCcugGGCCAACgCGGagGCGAUucgAGCu -3' miRNA: 3'- -UGCGa--CCGGUUGaGCCg-CGCUG---UCGc -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 13920 | 0.67 | 0.67059 |
Target: 5'- -gGCUGGCgGcCUUgGGCgGUGGCAGCGc -3' miRNA: 3'- ugCGACCGgUuGAG-CCG-CGCUGUCGC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 146998 | 0.67 | 0.67059 |
Target: 5'- cUGCUGGgaCCGAgUCGGUGgGGcCAGCa -3' miRNA: 3'- uGCGACC--GGUUgAGCCGCgCU-GUCGc -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 13341 | 0.67 | 0.660636 |
Target: 5'- gACGC-GGCaucGCUCGcguGUGCGGCAGCc -3' miRNA: 3'- -UGCGaCCGgu-UGAGC---CGCGCUGUCGc -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 52937 | 0.67 | 0.660636 |
Target: 5'- -gGCUGGCCAuGCgaaaGGCGgUGAgGGCGc -3' miRNA: 3'- ugCGACCGGU-UGag--CCGC-GCUgUCGC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 37333 | 0.67 | 0.65066 |
Target: 5'- cGCGCcGGCCcagucuGACUCuGGaucgGUGGCAGCGu -3' miRNA: 3'- -UGCGaCCGG------UUGAG-CCg---CGCUGUCGC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 85985 | 0.67 | 0.65066 |
Target: 5'- aACGC-GGCCA---CGG-GCGGCGGCGu -3' miRNA: 3'- -UGCGaCCGGUugaGCCgCGCUGUCGC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 5152 | 0.68 | 0.620678 |
Target: 5'- cACGC-GGCCGAggcugcgcgguCUCuGCGCGAC-GCGg -3' miRNA: 3'- -UGCGaCCGGUU-----------GAGcCGCGCUGuCGC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 138291 | 0.66 | 0.710027 |
Target: 5'- cACGCggcacGGCaccucGCUgGGUGCGACGGgGa -3' miRNA: 3'- -UGCGa----CCGgu---UGAgCCGCGCUGUCgC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 1250 | 0.66 | 0.710027 |
Target: 5'- gGCGCgGGCCcgUgaaaaaaauuuuUCGGCcucGCGACGGCc -3' miRNA: 3'- -UGCGaCCGGuuG------------AGCCG---CGCUGUCGc -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 54643 | 0.66 | 0.710027 |
Target: 5'- aGCGC-GGCCcugggaaauggcAACggCGGCaaacagagcgGCGGCAGCGg -3' miRNA: 3'- -UGCGaCCGG------------UUGa-GCCG----------CGCUGUCGC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 146523 | 0.66 | 0.757836 |
Target: 5'- gGCGCccUGGUCcccggAGCggccgCGGcCGCGGCAGCc -3' miRNA: 3'- -UGCG--ACCGG-----UUGa----GCC-GCGCUGUCGc -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 138498 | 0.66 | 0.748452 |
Target: 5'- cGCGCUG-CUGGCaUCGGCGgCGuCGGCc -3' miRNA: 3'- -UGCGACcGGUUG-AGCCGC-GCuGUCGc -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 76110 | 0.66 | 0.748452 |
Target: 5'- -aGUagUGGCCAAUUauGUGCG-CAGCGa -3' miRNA: 3'- ugCG--ACCGGUUGAgcCGCGCuGUCGC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 147640 | 0.66 | 0.73897 |
Target: 5'- cCGCca-CCAGCUCGGgGgGACAGUa -3' miRNA: 3'- uGCGaccGGUUGAGCCgCgCUGUCGc -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 49475 | 0.66 | 0.7294 |
Target: 5'- cCGCcggGGCCGuCcCGGaCGCGgcGCAGCGg -3' miRNA: 3'- uGCGa--CCGGUuGaGCC-GCGC--UGUCGC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 64987 | 0.66 | 0.719749 |
Target: 5'- gACGgaaUGG-CAGCUCccggcaGGCGCGACAGUu -3' miRNA: 3'- -UGCg--ACCgGUUGAG------CCGCGCUGUCGc -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 114618 | 0.66 | 0.719749 |
Target: 5'- cGCGC-GGCCAaccgauggggACUCGGgGCcuGGCuGCGc -3' miRNA: 3'- -UGCGaCCGGU----------UGAGCCgCG--CUGuCGC- -5' |
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2758 | 3' | -60 | NC_001491.2 | + | 148479 | 0.66 | 0.719749 |
Target: 5'- cGCGCUGGCgGuacuccCUCGGagccaggggaaCGCGGguGCGc -3' miRNA: 3'- -UGCGACCGgUu-----GAGCC-----------GCGCUguCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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