miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2758 5' -53.4 NC_001491.2 + 139795 0.66 0.969617
Target:  5'- gAGaCGCCGCCgGCgGACGcAGAgcgcUACUg -3'
miRNA:   3'- -UC-GCGGCGGgCG-CUGC-UUUaa--AUGAg -5'
2758 5' -53.4 NC_001491.2 + 116595 0.66 0.969617
Target:  5'- uGCGCC-UCCGCGGCGggGc------ -3'
miRNA:   3'- uCGCGGcGGGCGCUGCuuUaaaugag -5'
2758 5' -53.4 NC_001491.2 + 3141 0.66 0.966493
Target:  5'- cGgGCCGCCCGaCGucCGGAGcg-AUUCg -3'
miRNA:   3'- uCgCGGCGGGC-GCu-GCUUUaaaUGAG- -5'
2758 5' -53.4 NC_001491.2 + 139983 0.66 0.966493
Target:  5'- uGCGCCGCgCCGUGGgGcgGUac-CUCg -3'
miRNA:   3'- uCGCGGCG-GGCGCUgCuuUAaauGAG- -5'
2758 5' -53.4 NC_001491.2 + 123421 0.66 0.963149
Target:  5'- uGCGuCCGCCgGCGGCGu------CUCc -3'
miRNA:   3'- uCGC-GGCGGgCGCUGCuuuaaauGAG- -5'
2758 5' -53.4 NC_001491.2 + 147756 0.66 0.963149
Target:  5'- cGCGCCGuCCCGgGcCGggGggccGCUg -3'
miRNA:   3'- uCGCGGC-GGGCgCuGCuuUaaa-UGAg -5'
2758 5' -53.4 NC_001491.2 + 114637 0.66 0.959578
Target:  5'- gGGCGCCGCgcagagccaCCGCG-CGGccaaccGAUggggACUCg -3'
miRNA:   3'- -UCGCGGCG---------GGCGCuGCU------UUAaa--UGAG- -5'
2758 5' -53.4 NC_001491.2 + 67235 0.66 0.959578
Target:  5'- --aGCCGCgCGCG-CGggGaacugguguguUUUACUCg -3'
miRNA:   3'- ucgCGGCGgGCGCuGCuuU-----------AAAUGAG- -5'
2758 5' -53.4 NC_001491.2 + 92012 0.66 0.958837
Target:  5'- aAGCGUCuCCCGgGACGcuugcggACUCg -3'
miRNA:   3'- -UCGCGGcGGGCgCUGCuuuaaa-UGAG- -5'
2758 5' -53.4 NC_001491.2 + 114344 0.66 0.955384
Target:  5'- uGUGCCugccggaGCCCGaCGACGA-----GCUCg -3'
miRNA:   3'- uCGCGG-------CGGGC-GCUGCUuuaaaUGAG- -5'
2758 5' -53.4 NC_001491.2 + 41421 0.67 0.949202
Target:  5'- cAGCGCCGCuuGggucacaaugucgucUGACGAGGUggccUugUCc -3'
miRNA:   3'- -UCGCGGCGggC---------------GCUGCUUUAa---AugAG- -5'
2758 5' -53.4 NC_001491.2 + 71019 0.67 0.947463
Target:  5'- cGCGCgGCCCGCuccaggGAgGAGGccgACUCc -3'
miRNA:   3'- uCGCGgCGGGCG------CUgCUUUaaaUGAG- -5'
2758 5' -53.4 NC_001491.2 + 121625 0.67 0.947463
Target:  5'- gGGCGCaggGCCCGCGGgGAuagcgGCa- -3'
miRNA:   3'- -UCGCGg--CGGGCGCUgCUuuaaaUGag -5'
2758 5' -53.4 NC_001491.2 + 15774 0.67 0.938176
Target:  5'- cGGUGCaaaGUCCGCG-CGAGGUcugggUGCUUg -3'
miRNA:   3'- -UCGCGg--CGGGCGCuGCUUUAa----AUGAG- -5'
2758 5' -53.4 NC_001491.2 + 100890 0.67 0.938176
Target:  5'- uGGCGCCaaGUCCgGCG-CGGGAgg-ACUCg -3'
miRNA:   3'- -UCGCGG--CGGG-CGCuGCUUUaaaUGAG- -5'
2758 5' -53.4 NC_001491.2 + 125091 0.67 0.933163
Target:  5'- gGGgGCCGCCaacuccaGCGGCGAGGag-GCg- -3'
miRNA:   3'- -UCgCGGCGGg------CGCUGCUUUaaaUGag -5'
2758 5' -53.4 NC_001491.2 + 23250 0.67 0.933163
Target:  5'- cGCGCCGCCUgGCGGCa------ACUCa -3'
miRNA:   3'- uCGCGGCGGG-CGCUGcuuuaaaUGAG- -5'
2758 5' -53.4 NC_001491.2 + 116778 0.67 0.9279
Target:  5'- cGGCGCCcucgGUCCGCGuccGCGAAGcgUACa- -3'
miRNA:   3'- -UCGCGG----CGGGCGC---UGCUUUaaAUGag -5'
2758 5' -53.4 NC_001491.2 + 39092 0.68 0.922388
Target:  5'- uAGCGUCGCCuugCGCGAgcCGGAuAUUUGCg- -3'
miRNA:   3'- -UCGCGGCGG---GCGCU--GCUU-UAAAUGag -5'
2758 5' -53.4 NC_001491.2 + 34476 0.68 0.916627
Target:  5'- cGCGCCcugGCCCGgGACGAAcgUcg-UCg -3'
miRNA:   3'- uCGCGG---CGGGCgCUGCUUuaAaugAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.