Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 97583 | 0.72 | 0.715269 |
Target: 5'- -uCGCCGCCCGCGGaGAGAcgUGgUCg -3' miRNA: 3'- ucGCGGCGGGCGCUgCUUUaaAUgAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 6550 | 0.72 | 0.731429 |
Target: 5'- cAGCGCCGCCC-UGGCGcucaucggACUCg -3' miRNA: 3'- -UCGCGGCGGGcGCUGCuuuaaa--UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 148644 | 0.72 | 0.745382 |
Target: 5'- cGCGCCGgCCGCaGGCGAGGUacACg- -3' miRNA: 3'- uCGCGGCgGGCG-CUGCUUUAaaUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 51161 | 0.7 | 0.81157 |
Target: 5'- cGGCGCgGUCugCGCGAUGGAGgcgagGCUCg -3' miRNA: 3'- -UCGCGgCGG--GCGCUGCUUUaaa--UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 44580 | 0.7 | 0.82042 |
Target: 5'- uGGCGCCGCUgGCGGCcuuuGAAGUggAUUg -3' miRNA: 3'- -UCGCGGCGGgCGCUG----CUUUAaaUGAg -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 3988 | 0.7 | 0.837576 |
Target: 5'- uAGCGCCGCCacccaguacgacUGCGACGAGGa------ -3' miRNA: 3'- -UCGCGGCGG------------GCGCUGCUUUaaaugag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 125466 | 0.7 | 0.845865 |
Target: 5'- -cCGCCGCCCGCcgGGCGGGAg--ACg- -3' miRNA: 3'- ucGCGGCGGGCG--CUGCUUUaaaUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 106055 | 0.69 | 0.86183 |
Target: 5'- cAGCGCgGCggcagCCGCGGCGAGGccaaccacGCUCa -3' miRNA: 3'- -UCGCGgCG-----GGCGCUGCUUUaaa-----UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 45114 | 0.69 | 0.889051 |
Target: 5'- gGGcCGCCGCagauuuggccggggCCGCGGCGggGgu--CUCu -3' miRNA: 3'- -UC-GCGGCG--------------GGCGCUGCuuUaaauGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 84466 | 0.69 | 0.89112 |
Target: 5'- uGCuGCgGCCCGCGuCGAGAgccgaGCUUa -3' miRNA: 3'- uCG-CGgCGGGCGCuGCUUUaaa--UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 141649 | 0.68 | 0.911229 |
Target: 5'- uGCGCgUGCCCGCGAgGcuccccggcgGCUCg -3' miRNA: 3'- uCGCG-GCGGGCGCUgCuuuaaa----UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 34476 | 0.68 | 0.916627 |
Target: 5'- cGCGCCcugGCCCGgGACGAAcgUcg-UCg -3' miRNA: 3'- uCGCGG---CGGGCgCUGCUUuaAaugAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 11377 | 0.68 | 0.916627 |
Target: 5'- aGGCGCCccaaagcCCCGUacuGugGAAGUUUACg- -3' miRNA: 3'- -UCGCGGc------GGGCG---CugCUUUAAAUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 39092 | 0.68 | 0.922388 |
Target: 5'- uAGCGUCGCCuugCGCGAgcCGGAuAUUUGCg- -3' miRNA: 3'- -UCGCGGCGG---GCGCU--GCUU-UAAAUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 116778 | 0.67 | 0.9279 |
Target: 5'- cGGCGCCcucgGUCCGCGuccGCGAAGcgUACa- -3' miRNA: 3'- -UCGCGG----CGGGCGC---UGCUUUaaAUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 125091 | 0.67 | 0.933163 |
Target: 5'- gGGgGCCGCCaacuccaGCGGCGAGGag-GCg- -3' miRNA: 3'- -UCgCGGCGGg------CGCUGCUUUaaaUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 23250 | 0.67 | 0.933163 |
Target: 5'- cGCGCCGCCUgGCGGCa------ACUCa -3' miRNA: 3'- uCGCGGCGGG-CGCUGcuuuaaaUGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 100890 | 0.67 | 0.938176 |
Target: 5'- uGGCGCCaaGUCCgGCG-CGGGAgg-ACUCg -3' miRNA: 3'- -UCGCGG--CGGG-CGCuGCUUUaaaUGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 15774 | 0.67 | 0.938176 |
Target: 5'- cGGUGCaaaGUCCGCG-CGAGGUcugggUGCUUg -3' miRNA: 3'- -UCGCGg--CGGGCGCuGCUUUAa----AUGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 121625 | 0.67 | 0.947463 |
Target: 5'- gGGCGCaggGCCCGCGGgGAuagcgGCa- -3' miRNA: 3'- -UCGCGg--CGGGCGCUgCUuuaaaUGag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home