Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 148644 | 0.72 | 0.745382 |
Target: 5'- cGCGCCGgCCGCaGGCGAGGUacACg- -3' miRNA: 3'- uCGCGGCgGGCG-CUGCUUUAaaUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 147756 | 0.66 | 0.963149 |
Target: 5'- cGCGCCGuCCCGgGcCGggGggccGCUg -3' miRNA: 3'- uCGCGGC-GGGCgCuGCuuUaaa-UGAg -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 141649 | 0.68 | 0.911229 |
Target: 5'- uGCGCgUGCCCGCGAgGcuccccggcgGCUCg -3' miRNA: 3'- uCGCG-GCGGGCGCUgCuuuaaa----UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 139983 | 0.66 | 0.966493 |
Target: 5'- uGCGCCGCgCCGUGGgGcgGUac-CUCg -3' miRNA: 3'- uCGCGGCG-GGCGCUgCuuUAaauGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 139795 | 0.66 | 0.969617 |
Target: 5'- gAGaCGCCGCCgGCgGACGcAGAgcgcUACUg -3' miRNA: 3'- -UC-GCGGCGGgCG-CUGC-UUUaa--AUGAg -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 125466 | 0.7 | 0.845865 |
Target: 5'- -cCGCCGCCCGCcgGGCGGGAg--ACg- -3' miRNA: 3'- ucGCGGCGGGCG--CUGCUUUaaaUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 125091 | 0.67 | 0.933163 |
Target: 5'- gGGgGCCGCCaacuccaGCGGCGAGGag-GCg- -3' miRNA: 3'- -UCgCGGCGGg------CGCUGCUUUaaaUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 123421 | 0.66 | 0.963149 |
Target: 5'- uGCGuCCGCCgGCGGCGu------CUCc -3' miRNA: 3'- uCGC-GGCGGgCGCUGCuuuaaauGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 121625 | 0.67 | 0.947463 |
Target: 5'- gGGCGCaggGCCCGCGGgGAuagcgGCa- -3' miRNA: 3'- -UCGCGg--CGGGCGCUgCUuuaaaUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 116778 | 0.67 | 0.9279 |
Target: 5'- cGGCGCCcucgGUCCGCGuccGCGAAGcgUACa- -3' miRNA: 3'- -UCGCGG----CGGGCGC---UGCUUUaaAUGag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 116595 | 0.66 | 0.969617 |
Target: 5'- uGCGCC-UCCGCGGCGggGc------ -3' miRNA: 3'- uCGCGGcGGGCGCUGCuuUaaaugag -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 114637 | 0.66 | 0.959578 |
Target: 5'- gGGCGCCGCgcagagccaCCGCG-CGGccaaccGAUggggACUCg -3' miRNA: 3'- -UCGCGGCG---------GGCGCuGCU------UUAaa--UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 114344 | 0.66 | 0.955384 |
Target: 5'- uGUGCCugccggaGCCCGaCGACGA-----GCUCg -3' miRNA: 3'- uCGCGG-------CGGGC-GCUGCUuuaaaUGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 106055 | 0.69 | 0.86183 |
Target: 5'- cAGCGCgGCggcagCCGCGGCGAGGccaaccacGCUCa -3' miRNA: 3'- -UCGCGgCG-----GGCGCUGCUUUaaa-----UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 100890 | 0.67 | 0.938176 |
Target: 5'- uGGCGCCaaGUCCgGCG-CGGGAgg-ACUCg -3' miRNA: 3'- -UCGCGG--CGGG-CGCuGCUUUaaaUGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 97583 | 0.72 | 0.715269 |
Target: 5'- -uCGCCGCCCGCGGaGAGAcgUGgUCg -3' miRNA: 3'- ucGCGGCGGGCGCUgCUUUaaAUgAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 92012 | 0.66 | 0.958837 |
Target: 5'- aAGCGUCuCCCGgGACGcuugcggACUCg -3' miRNA: 3'- -UCGCGGcGGGCgCUGCuuuaaa-UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 84466 | 0.69 | 0.89112 |
Target: 5'- uGCuGCgGCCCGCGuCGAGAgccgaGCUUa -3' miRNA: 3'- uCG-CGgCGGGCGCuGCUUUaaa--UGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 71019 | 0.67 | 0.947463 |
Target: 5'- cGCGCgGCCCGCuccaggGAgGAGGccgACUCc -3' miRNA: 3'- uCGCGgCGGGCG------CUgCUUUaaaUGAG- -5' |
|||||||
2758 | 5' | -53.4 | NC_001491.2 | + | 67235 | 0.66 | 0.959578 |
Target: 5'- --aGCCGCgCGCG-CGggGaacugguguguUUUACUCg -3' miRNA: 3'- ucgCGGCGgGCGCuGCuuU-----------AAAUGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home