miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27580 3' -56.9 NC_005882.1 + 12717 0.69 0.350893
Target:  5'- aCGcagCGCgcgGCgGCGCuCGCCGGCGACc -3'
miRNA:   3'- gGCaa-GCGa--CG-CGUG-GCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 25583 0.69 0.325893
Target:  5'- gCGcggCGCcGCGCugCGUgAGCAACGc -3'
miRNA:   3'- gGCaa-GCGaCGCGugGCGgUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 15822 0.68 0.386294
Target:  5'- uUCGgaCGCUGgagcgGCGCCGCC-GCGACu -3'
miRNA:   3'- -GGCaaGCGACg----CGUGGCGGuCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 27186 0.68 0.386294
Target:  5'- gCCGUUCacgaGCUgGC-CGCCcaggacgcggGCCAGCAGCAu -3'
miRNA:   3'- -GGCAAG----CGA-CGcGUGG----------CGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 16008 0.68 0.395505
Target:  5'- gCGggUGC-GUGCGCCGCCgcaaGGCGGCc -3'
miRNA:   3'- gGCaaGCGaCGCGUGGCGG----UCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 27025 0.68 0.414346
Target:  5'- gUCGUUgGCcGCGCGCUGCUcccuuucgGGCAggGCAu -3'
miRNA:   3'- -GGCAAgCGaCGCGUGGCGG--------UCGU--UGU- -5'
27580 3' -56.9 NC_005882.1 + 26344 0.68 0.404856
Target:  5'- uUCGUa-GCU-CGaauaGCCGCCGGCGACAa -3'
miRNA:   3'- -GGCAagCGAcGCg---UGGCGGUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 3376 0.67 0.433729
Target:  5'- uCCGcgUCGaaaacccGCGUGCCGUCAgGCAGCAg -3'
miRNA:   3'- -GGCa-AGCga-----CGCGUGGCGGU-CGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 12859 0.67 0.433729
Target:  5'- ---cUCGCUGCGUguucACUGCCGGCu--- -3'
miRNA:   3'- ggcaAGCGACGCG----UGGCGGUCGuugu -5'
27580 3' -56.9 NC_005882.1 + 20730 0.67 0.453628
Target:  5'- aCGUUcCGCUGCaGCGCgGCgGcCAACAg -3'
miRNA:   3'- gGCAA-GCGACG-CGUGgCGgUcGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 23543 0.67 0.443615
Target:  5'- cUCGggC-CUGCGCcuguggggcaACCGCaCGGCGGCAu -3'
miRNA:   3'- -GGCaaGcGACGCG----------UGGCG-GUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 26562 0.67 0.443615
Target:  5'- aCGUgCGCcGCGCGgaGCUGGCGACc -3'
miRNA:   3'- gGCAaGCGaCGCGUggCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 3272 0.67 0.443615
Target:  5'- uCCGacgUGCUGCGCGagcgUGCgGGCGGCGu -3'
miRNA:   3'- -GGCaa-GCGACGCGUg---GCGgUCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 18228 0.67 0.453628
Target:  5'- aCCGaggacaacUUCGCcGCGCAagGCCGGCcGCGg -3'
miRNA:   3'- -GGC--------AAGCGaCGCGUggCGGUCGuUGU- -5'
27580 3' -56.9 NC_005882.1 + 3662 0.67 0.463762
Target:  5'- gCGUcgacgCGCUGCGCACuCGgcucacgaugaCCAGCAcGCGa -3'
miRNA:   3'- gGCAa----GCGACGCGUG-GC-----------GGUCGU-UGU- -5'
27580 3' -56.9 NC_005882.1 + 3375 0.67 0.453628
Target:  5'- gCGggCGCUGCGCggccugggcuACCGCguGCuGGCc -3'
miRNA:   3'- gGCaaGCGACGCG----------UGGCGguCG-UUGu -5'
27580 3' -56.9 NC_005882.1 + 18641 0.66 0.520381
Target:  5'- gCCGaUCGCgcucUGCGCGCCuCCGgaccacccgaggcgcGCAACGa -3'
miRNA:   3'- -GGCaAGCG----ACGCGUGGcGGU---------------CGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 30628 0.66 0.516088
Target:  5'- aUCGggCgGCgaugGCGCugCGCUgacgGGCAACGu -3'
miRNA:   3'- -GGCaaG-CGa---CGCGugGCGG----UCGUUGU- -5'
27580 3' -56.9 NC_005882.1 + 28233 0.66 0.515017
Target:  5'- cCCGUUcaagcCGCcgGCcguacagcccaagGUGCCGCCGGCGGCc -3'
miRNA:   3'- -GGCAA-----GCGa-CG-------------CGUGGCGGUCGUUGu -5'
27580 3' -56.9 NC_005882.1 + 32132 0.66 0.523609
Target:  5'- gCCGUacgugccugcgcgaUCGUUGUGuCGgCGCCGGCAu-- -3'
miRNA:   3'- -GGCA--------------AGCGACGC-GUgGCGGUCGUugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.