Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27580 | 3' | -56.9 | NC_005882.1 | + | 25583 | 0.69 | 0.325893 |
Target: 5'- gCGcggCGCcGCGCugCGUgAGCAACGc -3' miRNA: 3'- gGCaa-GCGaCGCGugGCGgUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12717 | 0.69 | 0.350893 |
Target: 5'- aCGcagCGCgcgGCgGCGCuCGCCGGCGACc -3' miRNA: 3'- gGCaa-GCGa--CG-CGUG-GCGGUCGUUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 15822 | 0.68 | 0.386294 |
Target: 5'- uUCGgaCGCUGgagcgGCGCCGCC-GCGACu -3' miRNA: 3'- -GGCaaGCGACg----CGUGGCGGuCGUUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 27186 | 0.68 | 0.386294 |
Target: 5'- gCCGUUCacgaGCUgGC-CGCCcaggacgcggGCCAGCAGCAu -3' miRNA: 3'- -GGCAAG----CGA-CGcGUGG----------CGGUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 16008 | 0.68 | 0.395505 |
Target: 5'- gCGggUGC-GUGCGCCGCCgcaaGGCGGCc -3' miRNA: 3'- gGCaaGCGaCGCGUGGCGG----UCGUUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 26344 | 0.68 | 0.404856 |
Target: 5'- uUCGUa-GCU-CGaauaGCCGCCGGCGACAa -3' miRNA: 3'- -GGCAagCGAcGCg---UGGCGGUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 27025 | 0.68 | 0.414346 |
Target: 5'- gUCGUUgGCcGCGCGCUGCUcccuuucgGGCAggGCAu -3' miRNA: 3'- -GGCAAgCGaCGCGUGGCGG--------UCGU--UGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12859 | 0.67 | 0.433729 |
Target: 5'- ---cUCGCUGCGUguucACUGCCGGCu--- -3' miRNA: 3'- ggcaAGCGACGCG----UGGCGGUCGuugu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 3376 | 0.67 | 0.433729 |
Target: 5'- uCCGcgUCGaaaacccGCGUGCCGUCAgGCAGCAg -3' miRNA: 3'- -GGCa-AGCga-----CGCGUGGCGGU-CGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 26562 | 0.67 | 0.443615 |
Target: 5'- aCGUgCGCcGCGCGgaGCUGGCGACc -3' miRNA: 3'- gGCAaGCGaCGCGUggCGGUCGUUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 23543 | 0.67 | 0.443615 |
Target: 5'- cUCGggC-CUGCGCcuguggggcaACCGCaCGGCGGCAu -3' miRNA: 3'- -GGCaaGcGACGCG----------UGGCG-GUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 3272 | 0.67 | 0.443615 |
Target: 5'- uCCGacgUGCUGCGCGagcgUGCgGGCGGCGu -3' miRNA: 3'- -GGCaa-GCGACGCGUg---GCGgUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 18228 | 0.67 | 0.453628 |
Target: 5'- aCCGaggacaacUUCGCcGCGCAagGCCGGCcGCGg -3' miRNA: 3'- -GGC--------AAGCGaCGCGUggCGGUCGuUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 3375 | 0.67 | 0.453628 |
Target: 5'- gCGggCGCUGCGCggccugggcuACCGCguGCuGGCc -3' miRNA: 3'- gGCaaGCGACGCG----------UGGCGguCG-UUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 20730 | 0.67 | 0.453628 |
Target: 5'- aCGUUcCGCUGCaGCGCgGCgGcCAACAg -3' miRNA: 3'- gGCAA-GCGACG-CGUGgCGgUcGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 3662 | 0.67 | 0.463762 |
Target: 5'- gCGUcgacgCGCUGCGCACuCGgcucacgaugaCCAGCAcGCGa -3' miRNA: 3'- gGCAa----GCGACGCGUG-GC-----------GGUCGU-UGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12610 | 0.66 | 0.474013 |
Target: 5'- ----aCGCcgGUGCGCuUGCCGGCGACGc -3' miRNA: 3'- ggcaaGCGa-CGCGUG-GCGGUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12329 | 0.66 | 0.474013 |
Target: 5'- gCGUgacgGCUGCcggcgGCGCCGaUCGGCAACGc -3' miRNA: 3'- gGCAag--CGACG-----CGUGGC-GGUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 21826 | 0.66 | 0.484376 |
Target: 5'- cCCG---GCUGCGCgucaaGCUGCCAGCGc-- -3' miRNA: 3'- -GGCaagCGACGCG-----UGGCGGUCGUugu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 17389 | 0.66 | 0.484376 |
Target: 5'- cUCGUagcccUUGCUGCGCAaguacucgaUCGCCuucuucGGCGGCAg -3' miRNA: 3'- -GGCA-----AGCGACGCGU---------GGCGG------UCGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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