Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27580 | 3' | -56.9 | NC_005882.1 | + | 20800 | 0.73 | 0.198205 |
Target: 5'- gCGUaCGCUGUugGCCGCCGGCuGCAg -3' miRNA: 3'- gGCAaGCGACGcgUGGCGGUCGuUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 20730 | 0.67 | 0.453628 |
Target: 5'- aCGUUcCGCUGCaGCGCgGCgGcCAACAg -3' miRNA: 3'- gGCAA-GCGACG-CGUGgCGgUcGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 19180 | 0.72 | 0.220271 |
Target: 5'- uCCGUcacgucggguuccUCGgUGCGCAgCCGCCGGCccuCAa -3' miRNA: 3'- -GGCA-------------AGCgACGCGU-GGCGGUCGuu-GU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 18641 | 0.66 | 0.520381 |
Target: 5'- gCCGaUCGCgcucUGCGCGCCuCCGgaccacccgaggcgcGCAACGa -3' miRNA: 3'- -GGCaAGCG----ACGCGUGGcGGU---------------CGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 18228 | 0.67 | 0.453628 |
Target: 5'- aCCGaggacaacUUCGCcGCGCAagGCCGGCcGCGg -3' miRNA: 3'- -GGC--------AAGCGaCGCGUggCGGUCGuUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 18134 | 0.72 | 0.233 |
Target: 5'- cUCGg-CGCUGCGCACgCGCUugcuGCAGCu -3' miRNA: 3'- -GGCaaGCGACGCGUG-GCGGu---CGUUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 17389 | 0.66 | 0.484376 |
Target: 5'- cUCGUagcccUUGCUGCGCAaguacucgaUCGCCuucuucGGCGGCAg -3' miRNA: 3'- -GGCA-----AGCGACGCGU---------GGCGG------UCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 16540 | 0.71 | 0.258953 |
Target: 5'- aUCGgaugCGCUGCGCggaugcuuGCCGaCCAGCAucgGCGa -3' miRNA: 3'- -GGCaa--GCGACGCG--------UGGC-GGUCGU---UGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 16008 | 0.68 | 0.395505 |
Target: 5'- gCGggUGC-GUGCGCCGCCgcaaGGCGGCc -3' miRNA: 3'- gGCaaGCGaCGCGUGGCGG----UCGUUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 15822 | 0.68 | 0.386294 |
Target: 5'- uUCGgaCGCUGgagcgGCGCCGCC-GCGACu -3' miRNA: 3'- -GGCaaGCGACg----CGUGGCGGuCGUUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 15324 | 0.75 | 0.126804 |
Target: 5'- gCCGUUCaucgucgaGCUGCGCaacguGCCGuuCCGGCAGCAg -3' miRNA: 3'- -GGCAAG--------CGACGCG-----UGGC--GGUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12859 | 0.67 | 0.433729 |
Target: 5'- ---cUCGCUGCGUguucACUGCCGGCu--- -3' miRNA: 3'- ggcaAGCGACGCG----UGGCGGUCGuugu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12721 | 0.66 | 0.50542 |
Target: 5'- aCGgcaUCGC-GCGCGCCGUCuGCGu-- -3' miRNA: 3'- gGCa--AGCGaCGCGUGGCGGuCGUugu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12717 | 0.69 | 0.350893 |
Target: 5'- aCGcagCGCgcgGCgGCGCuCGCCGGCGACc -3' miRNA: 3'- gGCaa-GCGa--CG-CGUG-GCGGUCGUUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12610 | 0.66 | 0.474013 |
Target: 5'- ----aCGCcgGUGCGCuUGCCGGCGACGc -3' miRNA: 3'- ggcaaGCGa-CGCGUG-GCGGUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12605 | 0.72 | 0.226863 |
Target: 5'- gCCGaUCGCcgcaGCGCcgGCCGCCGccGCGACAc -3' miRNA: 3'- -GGCaAGCGa---CGCG--UGGCGGU--CGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12408 | 0.75 | 0.146095 |
Target: 5'- gCCGaaccagCGUUGCcgaucgGCGCCGCCGGCAGCc -3' miRNA: 3'- -GGCaa----GCGACG------CGUGGCGGUCGUUGu -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12329 | 0.66 | 0.474013 |
Target: 5'- gCGUgacgGCUGCcggcgGCGCCGaUCGGCAACGc -3' miRNA: 3'- gGCAag--CGACG-----CGUGGC-GGUCGUUGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 12036 | 0.72 | 0.229301 |
Target: 5'- gUCGUUCGCgGCGCaaauccaccaggagaGCCGCUGGCGcGCGg -3' miRNA: 3'- -GGCAAGCGaCGCG---------------UGGCGGUCGU-UGU- -5' |
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27580 | 3' | -56.9 | NC_005882.1 | + | 11045 | 1.1 | 0.000354 |
Target: 5'- gCCGUUCGCUGCGCACCGCCAGCAACAc -3' miRNA: 3'- -GGCAAGCGACGCGUGGCGGUCGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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