miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27580 5' -56.7 NC_005882.1 + 12827 0.66 0.489735
Target:  5'- cCCGGCGCCGGAugcgccucuucaGGauuUGCCucgcUGCGUg- -3'
miRNA:   3'- aGGCCGUGGCUU------------UC---ACGGu---ACGCGaa -5'
27580 5' -56.7 NC_005882.1 + 4979 0.66 0.47913
Target:  5'- -aCGGcCGCCGAAggcAGUGCCuUGCcCUUg -3'
miRNA:   3'- agGCC-GUGGCUU---UCACGGuACGcGAA- -5'
27580 5' -56.7 NC_005882.1 + 9111 0.66 0.467597
Target:  5'- gUCGGCACCgugGAAAGUGCCGacuagguUGcCGUUc -3'
miRNA:   3'- aGGCCGUGG---CUUUCACGGU-------AC-GCGAa -5'
27580 5' -56.7 NC_005882.1 + 13778 0.66 0.448019
Target:  5'- -gCGGCgugcaacgccuGCCGAAg--GCCGUGCGCg- -3'
miRNA:   3'- agGCCG-----------UGGCUUucaCGGUACGCGaa -5'
27580 5' -56.7 NC_005882.1 + 22652 0.66 0.448018
Target:  5'- aCCGGC-CCGAucGGUGCgGUGC-Cg- -3'
miRNA:   3'- aGGCCGuGGCUu-UCACGgUACGcGaa -5'
27580 5' -56.7 NC_005882.1 + 12390 0.67 0.418059
Target:  5'- aUCGGCGCCGccGGcaGCCGUcacGCGCUg -3'
miRNA:   3'- aGGCCGUGGCuuUCa-CGGUA---CGCGAa -5'
27580 5' -56.7 NC_005882.1 + 10456 0.67 0.398777
Target:  5'- gCCGGC-UCGucAGUGCUugcgucGUGCGCUg -3'
miRNA:   3'- aGGCCGuGGCuuUCACGG------UACGCGAa -5'
27580 5' -56.7 NC_005882.1 + 21099 0.68 0.370945
Target:  5'- gCCGGCG-CGAAGGcGCUcgGCGUUg -3'
miRNA:   3'- aGGCCGUgGCUUUCaCGGuaCGCGAa -5'
27580 5' -56.7 NC_005882.1 + 30748 0.68 0.361966
Target:  5'- gCCGGCAUCcauGAuGGUGCCAgucGCGUUc -3'
miRNA:   3'- aGGCCGUGG---CUuUCACGGUa--CGCGAa -5'
27580 5' -56.7 NC_005882.1 + 14723 0.69 0.303424
Target:  5'- aCgGGCGCgaCGAcAGUGCCGUGaCGCg- -3'
miRNA:   3'- aGgCCGUG--GCUuUCACGGUAC-GCGaa -5'
27580 5' -56.7 NC_005882.1 + 21826 0.7 0.273377
Target:  5'- cCCGGCugCGcgucAAGcUGCCA-GCGCUg -3'
miRNA:   3'- aGGCCGugGCu---UUC-ACGGUaCGCGAa -5'
27580 5' -56.7 NC_005882.1 + 12906 0.72 0.208723
Target:  5'- gCCGGCGCCGAugguGUGCCcgcgaccaGUGCUg -3'
miRNA:   3'- aGGCCGUGGCUuu--CACGGua------CGCGAa -5'
27580 5' -56.7 NC_005882.1 + 11011 1.05 0.000641
Target:  5'- gUCCGGCACCGAAAGUGCCAUGCGCUUu -3'
miRNA:   3'- -AGGCCGUGGCUUUCACGGUACGCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.