miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27581 3' -61 NC_005882.1 + 9488 0.66 0.339285
Target:  5'- cCGCUGCGauuGGCGcgcuGGC--GGCCGCa -3'
miRNA:   3'- aGUGGCGCg--CCGCu---UCGuaCCGGCGc -5'
27581 3' -61 NC_005882.1 + 25426 0.66 0.339285
Target:  5'- -aGCUGCGC-GCGAGGCAUacCCGCc -3'
miRNA:   3'- agUGGCGCGcCGCUUCGUAccGGCGc -5'
27581 3' -61 NC_005882.1 + 13996 0.66 0.337663
Target:  5'- cUCGCCuugauCGCGGCGAAGCGgcgcucgauacGCUGCc -3'
miRNA:   3'- -AGUGGc----GCGCCGCUUCGUac---------CGGCGc -5'
27581 3' -61 NC_005882.1 + 1976 0.66 0.330434
Target:  5'- aUCGCCaaCGCGuaaccGCGAcaucgAGCAcuuucgcUGGCCGCGa -3'
miRNA:   3'- -AGUGGc-GCGC-----CGCU-----UCGU-------ACCGGCGC- -5'
27581 3' -61 NC_005882.1 + 5783 0.66 0.323321
Target:  5'- -uGCaggaGCGCGGCGggGCcgaccuGCUGCa -3'
miRNA:   3'- agUGg---CGCGCCGCuuCGuac---CGGCGc -5'
27581 3' -61 NC_005882.1 + 3265 0.66 0.323321
Target:  5'- -uGCUGCGCGaGCGu-GCG-GGCgGCGu -3'
miRNA:   3'- agUGGCGCGC-CGCuuCGUaCCGgCGC- -5'
27581 3' -61 NC_005882.1 + 20723 0.66 0.320975
Target:  5'- cUCGCCuacguuccgcugcaGCGCGGCGGccaacAGCGUacGCCGUa -3'
miRNA:   3'- -AGUGG--------------CGCGCCGCU-----UCGUAc-CGGCGc -5'
27581 3' -61 NC_005882.1 + 8905 0.66 0.318642
Target:  5'- uUCGCCaGCcuugagccccagcuuGaCGGCGAuuucguGCGccUGGCCGCGg -3'
miRNA:   3'- -AGUGG-CG---------------C-GCCGCUu-----CGU--ACCGGCGC- -5'
27581 3' -61 NC_005882.1 + 23406 0.66 0.315551
Target:  5'- cCGCCGCacgcgaugagaGCGGCuccAGGCGuuccgcguUGGUCGCGg -3'
miRNA:   3'- aGUGGCG-----------CGCCGc--UUCGU--------ACCGGCGC- -5'
27581 3' -61 NC_005882.1 + 27163 0.66 0.315551
Target:  5'- -gGgCGCGCGGUGcucuGGCucgGGCgCGCGc -3'
miRNA:   3'- agUgGCGCGCCGCu---UCGua-CCG-GCGC- -5'
27581 3' -61 NC_005882.1 + 26003 0.66 0.315551
Target:  5'- -aACCGCGCGGCcuacGGCGgcaagcucGGCCGg- -3'
miRNA:   3'- agUGGCGCGCCGcu--UCGUa-------CCGGCgc -5'
27581 3' -61 NC_005882.1 + 25588 0.66 0.315551
Target:  5'- gCGCCGCGCuGCGuGAGCAacgccaggGGCUcgGCGc -3'
miRNA:   3'- aGUGGCGCGcCGC-UUCGUa-------CCGG--CGC- -5'
27581 3' -61 NC_005882.1 + 27937 0.66 0.315551
Target:  5'- aCACgCGCGCuGCaGGGCAa-GCCGCGg -3'
miRNA:   3'- aGUG-GCGCGcCGcUUCGUacCGGCGC- -5'
27581 3' -61 NC_005882.1 + 22074 0.66 0.307923
Target:  5'- gCACCGcCGCGGCcguuGAGC-UGGCgcagcacgauCGCGa -3'
miRNA:   3'- aGUGGC-GCGCCGc---UUCGuACCG----------GCGC- -5'
27581 3' -61 NC_005882.1 + 20649 0.66 0.300437
Target:  5'- aCAUCGCGguCGGCGAAGCcaucuauGCCGaCGa -3'
miRNA:   3'- aGUGGCGC--GCCGCUUCGuac----CGGC-GC- -5'
27581 3' -61 NC_005882.1 + 30072 0.66 0.300437
Target:  5'- gUCACCGCGaaaGGCGAcgucGGCGuuguUGGaaccaCGCc -3'
miRNA:   3'- -AGUGGCGCg--CCGCU----UCGU----ACCg----GCGc -5'
27581 3' -61 NC_005882.1 + 3371 0.66 0.300437
Target:  5'- gCGCUGCGCGGCcuGGGCuaccgcgugcUGGCCGa- -3'
miRNA:   3'- aGUGGCGCGCCGc-UUCGu---------ACCGGCgc -5'
27581 3' -61 NC_005882.1 + 27079 0.66 0.300437
Target:  5'- gCAgCGCGCGGCcaacgacGAGCGc-GCCGCGc -3'
miRNA:   3'- aGUgGCGCGCCGc------UUCGUacCGGCGC- -5'
27581 3' -61 NC_005882.1 + 13942 0.67 0.293092
Target:  5'- uUCGCCGCGaucaaGGCGA-GCAcGGaaGCc -3'
miRNA:   3'- -AGUGGCGCg----CCGCUuCGUaCCggCGc -5'
27581 3' -61 NC_005882.1 + 27011 0.67 0.293092
Target:  5'- ----gGCGCGGCGc-GCucgucguUGGCCGCGc -3'
miRNA:   3'- aguggCGCGCCGCuuCGu------ACCGGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.