Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27582 | 3' | -52.7 | NC_005882.1 | + | 29947 | 0.66 | 0.741877 |
Target: 5'- aUCGUCUcGAUCGCGg---CGGCGGCu -3' miRNA: 3'- cAGUAGAcCUAGUGCaggaGCUGCUG- -5' |
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27582 | 3' | -52.7 | NC_005882.1 | + | 12132 | 0.67 | 0.708616 |
Target: 5'- cGUCGaCUGGAUCGCGggcgCCUaucCGGCc -3' miRNA: 3'- -CAGUaGACCUAGUGCa---GGAgcuGCUG- -5' |
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27582 | 3' | -52.7 | NC_005882.1 | + | 7039 | 0.67 | 0.697348 |
Target: 5'- ---uUUUGaaaugCugGUCCUCGACGACg -3' miRNA: 3'- caguAGACcua--GugCAGGAGCUGCUG- -5' |
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27582 | 3' | -52.7 | NC_005882.1 | + | 312 | 0.67 | 0.697348 |
Target: 5'- gGUCGUCguaGAUCccGCGUCCgccaGugGACa -3' miRNA: 3'- -CAGUAGac-CUAG--UGCAGGag--CugCUG- -5' |
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27582 | 3' | -52.7 | NC_005882.1 | + | 20538 | 0.67 | 0.663181 |
Target: 5'- uUCGUgcGGAUCGCuuccuugccGUCUUCGAUGACg -3' miRNA: 3'- cAGUAgaCCUAGUG---------CAGGAGCUGCUG- -5' |
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27582 | 3' | -52.7 | NC_005882.1 | + | 27114 | 0.68 | 0.628728 |
Target: 5'- ----gCUGGccCGCGUCCUgGGCGGCc -3' miRNA: 3'- caguaGACCuaGUGCAGGAgCUGCUG- -5' |
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27582 | 3' | -52.7 | NC_005882.1 | + | 14144 | 0.69 | 0.594302 |
Target: 5'- uUCGcCUGGAUCgGCGUCUUCGuCGGu -3' miRNA: 3'- cAGUaGACCUAG-UGCAGGAGCuGCUg -5' |
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27582 | 3' | -52.7 | NC_005882.1 | + | 13595 | 1.1 | 0.000991 |
Target: 5'- cGUCAUCUGGAUCACGUCCUCGACGACu -3' miRNA: 3'- -CAGUAGACCUAGUGCAGGAGCUGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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