miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27583 3' -59.4 NC_005882.1 + 16718 0.66 0.398087
Target:  5'- uCCGCGCaGGCcgGGCUugagGUGAcggacgacauucGCGACGg -3'
miRNA:   3'- -GGCGCGaCCGa-CCGA----CGCU------------CGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 3656 0.66 0.398087
Target:  5'- aCGCGCUGcGCacucGGCUcaCGAugaccagcacGCGACGCg -3'
miRNA:   3'- gGCGCGAC-CGa---CCGAc-GCU----------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 26148 0.66 0.388983
Target:  5'- gCCGCGaaGGCgccGGCaGUG-GCGACGa -3'
miRNA:   3'- -GGCGCgaCCGa--CCGaCGCuCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 10980 0.66 0.388983
Target:  5'- gCGUGUU-GCUGGCgGUGcGCAGCGa -3'
miRNA:   3'- gGCGCGAcCGACCGaCGCuCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 25444 0.66 0.388983
Target:  5'- cCCGC-CUGGgggacgcgaUGGC-GCGGGCcguuGCGCa -3'
miRNA:   3'- -GGCGcGACCg--------ACCGaCGCUCGu---UGCG- -5'
27583 3' -59.4 NC_005882.1 + 27873 0.66 0.388081
Target:  5'- aCGCGC-GGCgcucGcGCUucGCGAGCAggucgucgagcauGCGCu -3'
miRNA:   3'- gGCGCGaCCGa---C-CGA--CGCUCGU-------------UGCG- -5'
27583 3' -59.4 NC_005882.1 + 3585 0.66 0.380017
Target:  5'- gCGUGCUGGUcaucgUGaGCcgaGUGcGCAGCGCg -3'
miRNA:   3'- gGCGCGACCG-----AC-CGa--CGCuCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 13251 0.66 0.380017
Target:  5'- aUCGCGCUcGGaCUGGUggcgcucgaucUGCacGAGCAACa- -3'
miRNA:   3'- -GGCGCGA-CC-GACCG-----------ACG--CUCGUUGcg -5'
27583 3' -59.4 NC_005882.1 + 20796 0.67 0.345561
Target:  5'- aCGCuGUUGGCcgccGGCUGC-AGCGgaACGUa -3'
miRNA:   3'- gGCG-CGACCGa---CCGACGcUCGU--UGCG- -5'
27583 3' -59.4 NC_005882.1 + 6690 0.67 0.34059
Target:  5'- gCGCGCcgcacgacgacuucaUGGCUGGCguccuCGGGCAAauccaguuguCGCu -3'
miRNA:   3'- gGCGCG---------------ACCGACCGac---GCUCGUU----------GCG- -5'
27583 3' -59.4 NC_005882.1 + 24663 0.67 0.337304
Target:  5'- -aGCGuCUGGCcGGUaGCGAGUuuGACGg -3'
miRNA:   3'- ggCGC-GACCGaCCGaCGCUCG--UUGCg -5'
27583 3' -59.4 NC_005882.1 + 32352 0.67 0.329192
Target:  5'- gCCaGCGCUGGC-GGCaa-GAGCAGaucaGCc -3'
miRNA:   3'- -GG-CGCGACCGaCCGacgCUCGUUg---CG- -5'
27583 3' -59.4 NC_005882.1 + 10774 0.67 0.329192
Target:  5'- gCGCGCcGGC-GGUUGUgauaccggaucGAGCGGCGa -3'
miRNA:   3'- gGCGCGaCCGaCCGACG-----------CUCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 14112 0.67 0.329192
Target:  5'- aUCGCGCU-GCUguccaaGGCcGCGAagaacaucGCGACGCu -3'
miRNA:   3'- -GGCGCGAcCGA------CCGaCGCU--------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 14412 0.67 0.329192
Target:  5'- gCCGCGUUGGCuuguccUGGg-GCGAaGCAGC-Cg -3'
miRNA:   3'- -GGCGCGACCG------ACCgaCGCU-CGUUGcG- -5'
27583 3' -59.4 NC_005882.1 + 23718 0.67 0.329192
Target:  5'- gCGCGUcgacgaacuGCUGGCUGa-AGUAGCGCa -3'
miRNA:   3'- gGCGCGac-------CGACCGACgcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 15056 0.67 0.321225
Target:  5'- gCgGCGCaUGGCUGucgcgcgcGCUGauCGAGUcGCGCa -3'
miRNA:   3'- -GgCGCG-ACCGAC--------CGAC--GCUCGuUGCG- -5'
27583 3' -59.4 NC_005882.1 + 21982 0.67 0.321225
Target:  5'- gUCGUaCUGGCUGcccggauaGCUGaCcAGCAACGCg -3'
miRNA:   3'- -GGCGcGACCGAC--------CGAC-GcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 34853 0.67 0.316515
Target:  5'- gCCGCauagccggcgggcauGUUGGCgccGCUGUacacguucgGAGCAACGCu -3'
miRNA:   3'- -GGCG---------------CGACCGac-CGACG---------CUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 19271 0.67 0.313403
Target:  5'- gUCGCGCaGGCccuugagGGCcgGCG-GCuGCGCa -3'
miRNA:   3'- -GGCGCGaCCGa------CCGa-CGCuCGuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.