miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27583 3' -59.4 NC_005882.1 + 14512 1.12 0.000124
Target:  5'- gCCGCGCUGGCUGGCUGCGAGCAACGCu -3'
miRNA:   3'- -GGCGCGACCGACCGACGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 2100 0.84 0.01965
Target:  5'- uCCGCGCUGGCUGGaggcaaUGCGAGCcaucGGCGa -3'
miRNA:   3'- -GGCGCGACCGACCg-----ACGCUCG----UUGCg -5'
27583 3' -59.4 NC_005882.1 + 9500 0.77 0.069605
Target:  5'- gCGCGCUGGC-GGCcGCaAGCAcgACGCg -3'
miRNA:   3'- gGCGCGACCGaCCGaCGcUCGU--UGCG- -5'
27583 3' -59.4 NC_005882.1 + 25581 0.75 0.098261
Target:  5'- gCGCGC-GGCgccGcGCUGCguGAGCAACGCc -3'
miRNA:   3'- gGCGCGaCCGa--C-CGACG--CUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 22450 0.74 0.100239
Target:  5'- aCgGCGCUgcGGCcGGCUucagguagcccaucGCGAGCAGCGUc -3'
miRNA:   3'- -GgCGCGA--CCGaCCGA--------------CGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 11968 0.74 0.11648
Target:  5'- -gGCGCUGGCUaccgcgccGaGCUGaCGcGCAACGCa -3'
miRNA:   3'- ggCGCGACCGA--------C-CGAC-GCuCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 23228 0.73 0.123223
Target:  5'- -gGCGCUGGCcgGGC-GCGGGcCGGCGg -3'
miRNA:   3'- ggCGCGACCGa-CCGaCGCUC-GUUGCg -5'
27583 3' -59.4 NC_005882.1 + 28039 0.73 0.134021
Target:  5'- gCCGaGCUGGCgaaGCUGCGcGCGGCGg -3'
miRNA:   3'- -GGCgCGACCGac-CGACGCuCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 11991 0.72 0.158265
Target:  5'- uUGCGCggccacgGGCgcGGCggcGcCGAGCAACGCg -3'
miRNA:   3'- gGCGCGa------CCGa-CCGa--C-GCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 3268 0.71 0.16719
Target:  5'- aCGUGCUGcGC-GaGCgUGCGGGCGGCGUc -3'
miRNA:   3'- gGCGCGAC-CGaC-CG-ACGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 1962 0.7 0.203692
Target:  5'- aCCGCGacaucgagcacuuucGCUGGCcGCGAGCGucuCGCg -3'
miRNA:   3'- -GGCGCgac------------CGACCGaCGCUCGUu--GCG- -5'
27583 3' -59.4 NC_005882.1 + 28640 0.7 0.206981
Target:  5'- aCCGgGCcgcgGGCcaGCUcucgacgGCGAGCAGCGCg -3'
miRNA:   3'- -GGCgCGa---CCGacCGA-------CGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 32204 0.7 0.207534
Target:  5'- gCGCGaCUGaGCUGGC-GCGGGaCGAuauCGCg -3'
miRNA:   3'- gGCGC-GAC-CGACCGaCGCUC-GUU---GCG- -5'
27583 3' -59.4 NC_005882.1 + 12327 0.7 0.213131
Target:  5'- gCGCGUgacGGCUgccGGCgGCGccgaucGGCAACGCu -3'
miRNA:   3'- gGCGCGa--CCGA---CCGaCGC------UCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 30633 0.7 0.213131
Target:  5'- gCgGCGaugGcGCUGcGCUGaCGGGCAACGUg -3'
miRNA:   3'- -GgCGCga-C-CGAC-CGAC-GCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 32284 0.69 0.230704
Target:  5'- aCCGCGCccauucGCUGGCgGUcAGCAcGCGCa -3'
miRNA:   3'- -GGCGCGac----CGACCGaCGcUCGU-UGCG- -5'
27583 3' -59.4 NC_005882.1 + 14972 0.69 0.236828
Target:  5'- aUGCGCUGGUagagcccguccUGGaCUGCGucGGCgAACGUg -3'
miRNA:   3'- gGCGCGACCG-----------ACC-GACGC--UCG-UUGCG- -5'
27583 3' -59.4 NC_005882.1 + 27941 0.69 0.236828
Target:  5'- gCGCGCUgcagGGCaaGCcGCGGcuGCAACGCa -3'
miRNA:   3'- gGCGCGA----CCGacCGaCGCU--CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 10679 0.69 0.249484
Target:  5'- cCCGUGUcGGCagcGGCggagGCGgcGGCAGCGUg -3'
miRNA:   3'- -GGCGCGaCCGa--CCGa---CGC--UCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 8776 0.69 0.253388
Target:  5'- cCCGUGCcuguaucggaucgGGCaguUGGC-GaCGAGCAGCGCc -3'
miRNA:   3'- -GGCGCGa------------CCG---ACCGaC-GCUCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.