Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 21277 | 0.69 | 0.256019 |
Target: 5'- aCGCGCUcgaugcGGCgacGGCgGCcGGCGACGUc -3' miRNA: 3'- gGCGCGA------CCGa--CCGaCGcUCGUUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 14737 | 0.69 | 0.262693 |
Target: 5'- gCCGCGCaGGUUGGaCgggcGCGAcgacagugccGUGACGCg -3' miRNA: 3'- -GGCGCGaCCGACC-Ga---CGCU----------CGUUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 8432 | 0.68 | 0.282848 |
Target: 5'- aCGCGCUugaacucuguaaaGaGCaUGcGC-GCGAGCGGCGCa -3' miRNA: 3'- gGCGCGA-------------C-CG-AC-CGaCGCUCGUUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 27577 | 0.68 | 0.293009 |
Target: 5'- gCCGCGCgcgcggccgccggcaUGGCgacgcaGGCcGCGGccgcggcgucccuGCAGCGCa -3' miRNA: 3'- -GGCGCG---------------ACCGa-----CCGaCGCU-------------CGUUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 26568 | 0.68 | 0.305727 |
Target: 5'- gCCGCGCgGaGCUGGCgaccgucGCGuggGGCcgcuuucaGACGCa -3' miRNA: 3'- -GGCGCGaC-CGACCGa------CGC---UCG--------UUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 18257 | 0.68 | 0.305727 |
Target: 5'- gCCGCGgUGGCaGGCauUGuCGgaAGCGACGa -3' miRNA: 3'- -GGCGCgACCGaCCG--AC-GC--UCGUUGCg -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 27165 | 0.68 | 0.305727 |
Target: 5'- gCGCGC-GGUgcucUGGCU-CGGGC-GCGCg -3' miRNA: 3'- gGCGCGaCCG----ACCGAcGCUCGuUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 12809 | 0.67 | 0.310315 |
Target: 5'- gCGCGUgccgGGCUucucGGCgaacaggucgccgGCGAGCGccgccGCGCg -3' miRNA: 3'- gGCGCGa---CCGA----CCGa------------CGCUCGU-----UGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 19271 | 0.67 | 0.313403 |
Target: 5'- gUCGCGCaGGCccuugagGGCcgGCG-GCuGCGCa -3' miRNA: 3'- -GGCGCGaCCGa------CCGa-CGCuCGuUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 30065 | 0.67 | 0.313403 |
Target: 5'- gCCGCcuuuGCcGGcCUGGacgGCGAGCGccgaGCGCu -3' miRNA: 3'- -GGCG----CGaCC-GACCga-CGCUCGU----UGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 34853 | 0.67 | 0.316515 |
Target: 5'- gCCGCauagccggcgggcauGUUGGCgccGCUGUacacguucgGAGCAACGCu -3' miRNA: 3'- -GGCG---------------CGACCGac-CGACG---------CUCGUUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 15056 | 0.67 | 0.321225 |
Target: 5'- gCgGCGCaUGGCUGucgcgcgcGCUGauCGAGUcGCGCa -3' miRNA: 3'- -GgCGCG-ACCGAC--------CGAC--GCUCGuUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 21982 | 0.67 | 0.321225 |
Target: 5'- gUCGUaCUGGCUGcccggauaGCUGaCcAGCAACGCg -3' miRNA: 3'- -GGCGcGACCGAC--------CGAC-GcUCGUUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 14412 | 0.67 | 0.329192 |
Target: 5'- gCCGCGUUGGCuuguccUGGg-GCGAaGCAGC-Cg -3' miRNA: 3'- -GGCGCGACCG------ACCgaCGCU-CGUUGcG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 32352 | 0.67 | 0.329192 |
Target: 5'- gCCaGCGCUGGC-GGCaa-GAGCAGaucaGCc -3' miRNA: 3'- -GG-CGCGACCGaCCGacgCUCGUUg---CG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 14112 | 0.67 | 0.329192 |
Target: 5'- aUCGCGCU-GCUguccaaGGCcGCGAagaacaucGCGACGCu -3' miRNA: 3'- -GGCGCGAcCGA------CCGaCGCU--------CGUUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 10774 | 0.67 | 0.329192 |
Target: 5'- gCGCGCcGGC-GGUUGUgauaccggaucGAGCGGCGa -3' miRNA: 3'- gGCGCGaCCGaCCGACG-----------CUCGUUGCg -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 23718 | 0.67 | 0.329192 |
Target: 5'- gCGCGUcgacgaacuGCUGGCUGa-AGUAGCGCa -3' miRNA: 3'- gGCGCGac-------CGACCGACgcUCGUUGCG- -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 24663 | 0.67 | 0.337304 |
Target: 5'- -aGCGuCUGGCcGGUaGCGAGUuuGACGg -3' miRNA: 3'- ggCGC-GACCGaCCGaCGCUCG--UUGCg -5' |
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27583 | 3' | -59.4 | NC_005882.1 | + | 6690 | 0.67 | 0.34059 |
Target: 5'- gCGCGCcgcacgacgacuucaUGGCUGGCguccuCGGGCAAauccaguuguCGCu -3' miRNA: 3'- gGCGCG---------------ACCGACCGac---GCUCGUU----------GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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