miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27583 3' -59.4 NC_005882.1 + 14737 0.69 0.262693
Target:  5'- gCCGCGCaGGUUGGaCgggcGCGAcgacagugccGUGACGCg -3'
miRNA:   3'- -GGCGCGaCCGACC-Ga---CGCU----------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 14972 0.69 0.236828
Target:  5'- aUGCGCUGGUagagcccguccUGGaCUGCGucGGCgAACGUg -3'
miRNA:   3'- gGCGCGACCG-----------ACC-GACGC--UCG-UUGCG- -5'
27583 3' -59.4 NC_005882.1 + 15056 0.67 0.321225
Target:  5'- gCgGCGCaUGGCUGucgcgcgcGCUGauCGAGUcGCGCa -3'
miRNA:   3'- -GgCGCG-ACCGAC--------CGAC--GCUCGuUGCG- -5'
27583 3' -59.4 NC_005882.1 + 16718 0.66 0.398087
Target:  5'- uCCGCGCaGGCcgGGCUugagGUGAcggacgacauucGCGACGg -3'
miRNA:   3'- -GGCGCGaCCGa-CCGA----CGCU------------CGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 18257 0.68 0.305727
Target:  5'- gCCGCGgUGGCaGGCauUGuCGgaAGCGACGa -3'
miRNA:   3'- -GGCGCgACCGaCCG--AC-GC--UCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 19271 0.67 0.313403
Target:  5'- gUCGCGCaGGCccuugagGGCcgGCG-GCuGCGCa -3'
miRNA:   3'- -GGCGCGaCCGa------CCGa-CGCuCGuUGCG- -5'
27583 3' -59.4 NC_005882.1 + 20796 0.67 0.345561
Target:  5'- aCGCuGUUGGCcgccGGCUGC-AGCGgaACGUa -3'
miRNA:   3'- gGCG-CGACCGa---CCGACGcUCGU--UGCG- -5'
27583 3' -59.4 NC_005882.1 + 21277 0.69 0.256019
Target:  5'- aCGCGCUcgaugcGGCgacGGCgGCcGGCGACGUc -3'
miRNA:   3'- gGCGCGA------CCGa--CCGaCGcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 21982 0.67 0.321225
Target:  5'- gUCGUaCUGGCUGcccggauaGCUGaCcAGCAACGCg -3'
miRNA:   3'- -GGCGcGACCGAC--------CGAC-GcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 22450 0.74 0.100239
Target:  5'- aCgGCGCUgcGGCcGGCUucagguagcccaucGCGAGCAGCGUc -3'
miRNA:   3'- -GgCGCGA--CCGaCCGA--------------CGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 23228 0.73 0.123223
Target:  5'- -gGCGCUGGCcgGGC-GCGGGcCGGCGg -3'
miRNA:   3'- ggCGCGACCGa-CCGaCGCUC-GUUGCg -5'
27583 3' -59.4 NC_005882.1 + 23718 0.67 0.329192
Target:  5'- gCGCGUcgacgaacuGCUGGCUGa-AGUAGCGCa -3'
miRNA:   3'- gGCGCGac-------CGACCGACgcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 24663 0.67 0.337304
Target:  5'- -aGCGuCUGGCcGGUaGCGAGUuuGACGg -3'
miRNA:   3'- ggCGC-GACCGaCCGaCGCUCG--UUGCg -5'
27583 3' -59.4 NC_005882.1 + 25444 0.66 0.388983
Target:  5'- cCCGC-CUGGgggacgcgaUGGC-GCGGGCcguuGCGCa -3'
miRNA:   3'- -GGCGcGACCg--------ACCGaCGCUCGu---UGCG- -5'
27583 3' -59.4 NC_005882.1 + 25581 0.75 0.098261
Target:  5'- gCGCGC-GGCgccGcGCUGCguGAGCAACGCc -3'
miRNA:   3'- gGCGCGaCCGa--C-CGACG--CUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 26148 0.66 0.388983
Target:  5'- gCCGCGaaGGCgccGGCaGUG-GCGACGa -3'
miRNA:   3'- -GGCGCgaCCGa--CCGaCGCuCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 26568 0.68 0.305727
Target:  5'- gCCGCGCgGaGCUGGCgaccgucGCGuggGGCcgcuuucaGACGCa -3'
miRNA:   3'- -GGCGCGaC-CGACCGa------CGC---UCG--------UUGCG- -5'
27583 3' -59.4 NC_005882.1 + 27165 0.68 0.305727
Target:  5'- gCGCGC-GGUgcucUGGCU-CGGGC-GCGCg -3'
miRNA:   3'- gGCGCGaCCG----ACCGAcGCUCGuUGCG- -5'
27583 3' -59.4 NC_005882.1 + 27577 0.68 0.293009
Target:  5'- gCCGCGCgcgcggccgccggcaUGGCgacgcaGGCcGCGGccgcggcgucccuGCAGCGCa -3'
miRNA:   3'- -GGCGCG---------------ACCGa-----CCGaCGCU-------------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 27873 0.66 0.388081
Target:  5'- aCGCGC-GGCgcucGcGCUucGCGAGCAggucgucgagcauGCGCu -3'
miRNA:   3'- gGCGCGaCCGa---C-CGA--CGCUCGU-------------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.