Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 27583 | 3' | -59.4 | NC_005882.1 | + | 27941 | 0.69 | 0.236828 |
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Target: 5'- gCGCGCUgcagGGCaaGCcGCGGcuGCAACGCa -3' miRNA: 3'- gGCGCGA----CCGacCGaCGCU--CGUUGCG- -5' |
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| 27583 | 3' | -59.4 | NC_005882.1 | + | 28039 | 0.73 | 0.134021 |
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Target: 5'- gCCGaGCUGGCgaaGCUGCGcGCGGCGg -3' miRNA: 3'- -GGCgCGACCGac-CGACGCuCGUUGCg -5' |
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| 27583 | 3' | -59.4 | NC_005882.1 | + | 28640 | 0.7 | 0.206981 |
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Target: 5'- aCCGgGCcgcgGGCcaGCUcucgacgGCGAGCAGCGCg -3' miRNA: 3'- -GGCgCGa---CCGacCGA-------CGCUCGUUGCG- -5' |
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| 27583 | 3' | -59.4 | NC_005882.1 | + | 30065 | 0.67 | 0.313403 |
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Target: 5'- gCCGCcuuuGCcGGcCUGGacgGCGAGCGccgaGCGCu -3' miRNA: 3'- -GGCG----CGaCC-GACCga-CGCUCGU----UGCG- -5' |
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| 27583 | 3' | -59.4 | NC_005882.1 | + | 30633 | 0.7 | 0.213131 |
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Target: 5'- gCgGCGaugGcGCUGcGCUGaCGGGCAACGUg -3' miRNA: 3'- -GgCGCga-C-CGAC-CGAC-GCUCGUUGCG- -5' |
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| 27583 | 3' | -59.4 | NC_005882.1 | + | 32204 | 0.7 | 0.207534 |
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Target: 5'- gCGCGaCUGaGCUGGC-GCGGGaCGAuauCGCg -3' miRNA: 3'- gGCGC-GAC-CGACCGaCGCUC-GUU---GCG- -5' |
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| 27583 | 3' | -59.4 | NC_005882.1 | + | 32284 | 0.69 | 0.230704 |
|
Target: 5'- aCCGCGCccauucGCUGGCgGUcAGCAcGCGCa -3' miRNA: 3'- -GGCGCGac----CGACCGaCGcUCGU-UGCG- -5' |
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| 27583 | 3' | -59.4 | NC_005882.1 | + | 32352 | 0.67 | 0.329192 |
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Target: 5'- gCCaGCGCUGGC-GGCaa-GAGCAGaucaGCc -3' miRNA: 3'- -GG-CGCGACCGaCCGacgCUCGUUg---CG- -5' |
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| 27583 | 3' | -59.4 | NC_005882.1 | + | 34853 | 0.67 | 0.316515 |
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Target: 5'- gCCGCauagccggcgggcauGUUGGCgccGCUGUacacguucgGAGCAACGCu -3' miRNA: 3'- -GGCG---------------CGACCGac-CGACG---------CUCGUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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