Results 1 - 20 of 49 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 34853 | 0.67 | 0.316515 |
Target: 5'- gCCGCauagccggcgggcauGUUGGCgccGCUGUacacguucgGAGCAACGCu -3' miRNA: 3'- -GGCG---------------CGACCGac-CGACG---------CUCGUUGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 32352 | 0.67 | 0.329192 |
Target: 5'- gCCaGCGCUGGC-GGCaa-GAGCAGaucaGCc -3' miRNA: 3'- -GG-CGCGACCGaCCGacgCUCGUUg---CG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 32284 | 0.69 | 0.230704 |
Target: 5'- aCCGCGCccauucGCUGGCgGUcAGCAcGCGCa -3' miRNA: 3'- -GGCGCGac----CGACCGaCGcUCGU-UGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 32204 | 0.7 | 0.207534 |
Target: 5'- gCGCGaCUGaGCUGGC-GCGGGaCGAuauCGCg -3' miRNA: 3'- gGCGC-GAC-CGACCGaCGCUC-GUU---GCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 30633 | 0.7 | 0.213131 |
Target: 5'- gCgGCGaugGcGCUGcGCUGaCGGGCAACGUg -3' miRNA: 3'- -GgCGCga-C-CGAC-CGAC-GCUCGUUGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 30065 | 0.67 | 0.313403 |
Target: 5'- gCCGCcuuuGCcGGcCUGGacgGCGAGCGccgaGCGCu -3' miRNA: 3'- -GGCG----CGaCC-GACCga-CGCUCGU----UGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 28640 | 0.7 | 0.206981 |
Target: 5'- aCCGgGCcgcgGGCcaGCUcucgacgGCGAGCAGCGCg -3' miRNA: 3'- -GGCgCGa---CCGacCGA-------CGCUCGUUGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 28039 | 0.73 | 0.134021 |
Target: 5'- gCCGaGCUGGCgaaGCUGCGcGCGGCGg -3' miRNA: 3'- -GGCgCGACCGac-CGACGCuCGUUGCg -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 27941 | 0.69 | 0.236828 |
Target: 5'- gCGCGCUgcagGGCaaGCcGCGGcuGCAACGCa -3' miRNA: 3'- gGCGCGA----CCGacCGaCGCU--CGUUGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 27873 | 0.66 | 0.388081 |
Target: 5'- aCGCGC-GGCgcucGcGCUucGCGAGCAggucgucgagcauGCGCu -3' miRNA: 3'- gGCGCGaCCGa---C-CGA--CGCUCGU-------------UGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 27577 | 0.68 | 0.293009 |
Target: 5'- gCCGCGCgcgcggccgccggcaUGGCgacgcaGGCcGCGGccgcggcgucccuGCAGCGCa -3' miRNA: 3'- -GGCGCG---------------ACCGa-----CCGaCGCU-------------CGUUGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 27165 | 0.68 | 0.305727 |
Target: 5'- gCGCGC-GGUgcucUGGCU-CGGGC-GCGCg -3' miRNA: 3'- gGCGCGaCCG----ACCGAcGCUCGuUGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 26568 | 0.68 | 0.305727 |
Target: 5'- gCCGCGCgGaGCUGGCgaccgucGCGuggGGCcgcuuucaGACGCa -3' miRNA: 3'- -GGCGCGaC-CGACCGa------CGC---UCG--------UUGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 26148 | 0.66 | 0.388983 |
Target: 5'- gCCGCGaaGGCgccGGCaGUG-GCGACGa -3' miRNA: 3'- -GGCGCgaCCGa--CCGaCGCuCGUUGCg -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 25581 | 0.75 | 0.098261 |
Target: 5'- gCGCGC-GGCgccGcGCUGCguGAGCAACGCc -3' miRNA: 3'- gGCGCGaCCGa--C-CGACG--CUCGUUGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 25444 | 0.66 | 0.388983 |
Target: 5'- cCCGC-CUGGgggacgcgaUGGC-GCGGGCcguuGCGCa -3' miRNA: 3'- -GGCGcGACCg--------ACCGaCGCUCGu---UGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 24663 | 0.67 | 0.337304 |
Target: 5'- -aGCGuCUGGCcGGUaGCGAGUuuGACGg -3' miRNA: 3'- ggCGC-GACCGaCCGaCGCUCG--UUGCg -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 23718 | 0.67 | 0.329192 |
Target: 5'- gCGCGUcgacgaacuGCUGGCUGa-AGUAGCGCa -3' miRNA: 3'- gGCGCGac-------CGACCGACgcUCGUUGCG- -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 23228 | 0.73 | 0.123223 |
Target: 5'- -gGCGCUGGCcgGGC-GCGGGcCGGCGg -3' miRNA: 3'- ggCGCGACCGa-CCGaCGCUC-GUUGCg -5' |
|||||||
27583 | 3' | -59.4 | NC_005882.1 | + | 22450 | 0.74 | 0.100239 |
Target: 5'- aCgGCGCUgcGGCcGGCUucagguagcccaucGCGAGCAGCGUc -3' miRNA: 3'- -GgCGCGA--CCGaCCGA--------------CGCUCGUUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home