miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27583 3' -59.4 NC_005882.1 + 21982 0.67 0.321225
Target:  5'- gUCGUaCUGGCUGcccggauaGCUGaCcAGCAACGCg -3'
miRNA:   3'- -GGCGcGACCGAC--------CGAC-GcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 21277 0.69 0.256019
Target:  5'- aCGCGCUcgaugcGGCgacGGCgGCcGGCGACGUc -3'
miRNA:   3'- gGCGCGA------CCGa--CCGaCGcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 20796 0.67 0.345561
Target:  5'- aCGCuGUUGGCcgccGGCUGC-AGCGgaACGUa -3'
miRNA:   3'- gGCG-CGACCGa---CCGACGcUCGU--UGCG- -5'
27583 3' -59.4 NC_005882.1 + 19271 0.67 0.313403
Target:  5'- gUCGCGCaGGCccuugagGGCcgGCG-GCuGCGCa -3'
miRNA:   3'- -GGCGCGaCCGa------CCGa-CGCuCGuUGCG- -5'
27583 3' -59.4 NC_005882.1 + 18257 0.68 0.305727
Target:  5'- gCCGCGgUGGCaGGCauUGuCGgaAGCGACGa -3'
miRNA:   3'- -GGCGCgACCGaCCG--AC-GC--UCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 16718 0.66 0.398087
Target:  5'- uCCGCGCaGGCcgGGCUugagGUGAcggacgacauucGCGACGg -3'
miRNA:   3'- -GGCGCGaCCGa-CCGA----CGCU------------CGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 15056 0.67 0.321225
Target:  5'- gCgGCGCaUGGCUGucgcgcgcGCUGauCGAGUcGCGCa -3'
miRNA:   3'- -GgCGCG-ACCGAC--------CGAC--GCUCGuUGCG- -5'
27583 3' -59.4 NC_005882.1 + 14972 0.69 0.236828
Target:  5'- aUGCGCUGGUagagcccguccUGGaCUGCGucGGCgAACGUg -3'
miRNA:   3'- gGCGCGACCG-----------ACC-GACGC--UCG-UUGCG- -5'
27583 3' -59.4 NC_005882.1 + 14737 0.69 0.262693
Target:  5'- gCCGCGCaGGUUGGaCgggcGCGAcgacagugccGUGACGCg -3'
miRNA:   3'- -GGCGCGaCCGACC-Ga---CGCU----------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 14512 1.12 0.000124
Target:  5'- gCCGCGCUGGCUGGCUGCGAGCAACGCu -3'
miRNA:   3'- -GGCGCGACCGACCGACGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 14412 0.67 0.329192
Target:  5'- gCCGCGUUGGCuuguccUGGg-GCGAaGCAGC-Cg -3'
miRNA:   3'- -GGCGCGACCG------ACCgaCGCU-CGUUGcG- -5'
27583 3' -59.4 NC_005882.1 + 14112 0.67 0.329192
Target:  5'- aUCGCGCU-GCUguccaaGGCcGCGAagaacaucGCGACGCu -3'
miRNA:   3'- -GGCGCGAcCGA------CCGaCGCU--------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 13251 0.66 0.380017
Target:  5'- aUCGCGCUcGGaCUGGUggcgcucgaucUGCacGAGCAACa- -3'
miRNA:   3'- -GGCGCGA-CC-GACCG-----------ACG--CUCGUUGcg -5'
27583 3' -59.4 NC_005882.1 + 12809 0.67 0.310315
Target:  5'- gCGCGUgccgGGCUucucGGCgaacaggucgccgGCGAGCGccgccGCGCg -3'
miRNA:   3'- gGCGCGa---CCGA----CCGa------------CGCUCGU-----UGCG- -5'
27583 3' -59.4 NC_005882.1 + 12327 0.7 0.213131
Target:  5'- gCGCGUgacGGCUgccGGCgGCGccgaucGGCAACGCu -3'
miRNA:   3'- gGCGCGa--CCGA---CCGaCGC------UCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 11991 0.72 0.158265
Target:  5'- uUGCGCggccacgGGCgcGGCggcGcCGAGCAACGCg -3'
miRNA:   3'- gGCGCGa------CCGa-CCGa--C-GCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 11968 0.74 0.11648
Target:  5'- -gGCGCUGGCUaccgcgccGaGCUGaCGcGCAACGCa -3'
miRNA:   3'- ggCGCGACCGA--------C-CGAC-GCuCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 10980 0.66 0.388983
Target:  5'- gCGUGUU-GCUGGCgGUGcGCAGCGa -3'
miRNA:   3'- gGCGCGAcCGACCGaCGCuCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 10774 0.67 0.329192
Target:  5'- gCGCGCcGGC-GGUUGUgauaccggaucGAGCGGCGa -3'
miRNA:   3'- gGCGCGaCCGaCCGACG-----------CUCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 10679 0.69 0.249484
Target:  5'- cCCGUGUcGGCagcGGCggagGCGgcGGCAGCGUg -3'
miRNA:   3'- -GGCGCGaCCGa--CCGa---CGC--UCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.