miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27583 3' -59.4 NC_005882.1 + 25444 0.66 0.388983
Target:  5'- cCCGC-CUGGgggacgcgaUGGC-GCGGGCcguuGCGCa -3'
miRNA:   3'- -GGCGcGACCg--------ACCGaCGCUCGu---UGCG- -5'
27583 3' -59.4 NC_005882.1 + 26568 0.68 0.305727
Target:  5'- gCCGCGCgGaGCUGGCgaccgucGCGuggGGCcgcuuucaGACGCa -3'
miRNA:   3'- -GGCGCGaC-CGACCGa------CGC---UCG--------UUGCG- -5'
27583 3' -59.4 NC_005882.1 + 27165 0.68 0.305727
Target:  5'- gCGCGC-GGUgcucUGGCU-CGGGC-GCGCg -3'
miRNA:   3'- gGCGCGaCCG----ACCGAcGCUCGuUGCG- -5'
27583 3' -59.4 NC_005882.1 + 15056 0.67 0.321225
Target:  5'- gCgGCGCaUGGCUGucgcgcgcGCUGauCGAGUcGCGCa -3'
miRNA:   3'- -GgCGCG-ACCGAC--------CGAC--GCUCGuUGCG- -5'
27583 3' -59.4 NC_005882.1 + 14412 0.67 0.329192
Target:  5'- gCCGCGUUGGCuuguccUGGg-GCGAaGCAGC-Cg -3'
miRNA:   3'- -GGCGCGACCG------ACCgaCGCU-CGUUGcG- -5'
27583 3' -59.4 NC_005882.1 + 14112 0.67 0.329192
Target:  5'- aUCGCGCU-GCUguccaaGGCcGCGAagaacaucGCGACGCu -3'
miRNA:   3'- -GGCGCGAcCGA------CCGaCGCU--------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 3585 0.66 0.380017
Target:  5'- gCGUGCUGGUcaucgUGaGCcgaGUGcGCAGCGCg -3'
miRNA:   3'- gGCGCGACCG-----AC-CGa--CGCuCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 10980 0.66 0.388983
Target:  5'- gCGUGUU-GCUGGCgGUGcGCAGCGa -3'
miRNA:   3'- gGCGCGAcCGACCGaCGCuCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 26148 0.66 0.388983
Target:  5'- gCCGCGaaGGCgccGGCaGUG-GCGACGa -3'
miRNA:   3'- -GGCGCgaCCGa--CCGaCGCuCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 18257 0.68 0.305727
Target:  5'- gCCGCGgUGGCaGGCauUGuCGgaAGCGACGa -3'
miRNA:   3'- -GGCGCgACCGaCCG--AC-GC--UCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 27577 0.68 0.293009
Target:  5'- gCCGCGCgcgcggccgccggcaUGGCgacgcaGGCcGCGGccgcggcgucccuGCAGCGCa -3'
miRNA:   3'- -GGCGCG---------------ACCGa-----CCGaCGCU-------------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 21277 0.69 0.256019
Target:  5'- aCGCGCUcgaugcGGCgacGGCgGCcGGCGACGUc -3'
miRNA:   3'- gGCGCGA------CCGa--CCGaCGcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 25581 0.75 0.098261
Target:  5'- gCGCGC-GGCgccGcGCUGCguGAGCAACGCc -3'
miRNA:   3'- gGCGCGaCCGa--C-CGACG--CUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 11968 0.74 0.11648
Target:  5'- -gGCGCUGGCUaccgcgccGaGCUGaCGcGCAACGCa -3'
miRNA:   3'- ggCGCGACCGA--------C-CGAC-GCuCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 23228 0.73 0.123223
Target:  5'- -gGCGCUGGCcgGGC-GCGGGcCGGCGg -3'
miRNA:   3'- ggCGCGACCGa-CCGaCGCUC-GUUGCg -5'
27583 3' -59.4 NC_005882.1 + 28039 0.73 0.134021
Target:  5'- gCCGaGCUGGCgaaGCUGCGcGCGGCGg -3'
miRNA:   3'- -GGCgCGACCGac-CGACGCuCGUUGCg -5'
27583 3' -59.4 NC_005882.1 + 28640 0.7 0.206981
Target:  5'- aCCGgGCcgcgGGCcaGCUcucgacgGCGAGCAGCGCg -3'
miRNA:   3'- -GGCgCGa---CCGacCGA-------CGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 30633 0.7 0.213131
Target:  5'- gCgGCGaugGcGCUGcGCUGaCGGGCAACGUg -3'
miRNA:   3'- -GgCGCga-C-CGAC-CGAC-GCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 12327 0.7 0.213131
Target:  5'- gCGCGUgacGGCUgccGGCgGCGccgaucGGCAACGCu -3'
miRNA:   3'- gGCGCGa--CCGA---CCGaCGC------UCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 27941 0.69 0.236828
Target:  5'- gCGCGCUgcagGGCaaGCcGCGGcuGCAACGCa -3'
miRNA:   3'- gGCGCGA----CCGacCGaCGCU--CGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.