miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27583 3' -59.4 NC_005882.1 + 14512 1.12 0.000124
Target:  5'- gCCGCGCUGGCUGGCUGCGAGCAACGCu -3'
miRNA:   3'- -GGCGCGACCGACCGACGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 21982 0.67 0.321225
Target:  5'- gUCGUaCUGGCUGcccggauaGCUGaCcAGCAACGCg -3'
miRNA:   3'- -GGCGcGACCGAC--------CGAC-GcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 23718 0.67 0.329192
Target:  5'- gCGCGUcgacgaacuGCUGGCUGa-AGUAGCGCa -3'
miRNA:   3'- gGCGCGac-------CGACCGACgcUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 3656 0.66 0.398087
Target:  5'- aCGCGCUGcGCacucGGCUcaCGAugaccagcacGCGACGCg -3'
miRNA:   3'- gGCGCGAC-CGa---CCGAc-GCU----------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 3268 0.71 0.16719
Target:  5'- aCGUGCUGcGC-GaGCgUGCGGGCGGCGUc -3'
miRNA:   3'- gGCGCGAC-CGaC-CG-ACGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 1962 0.7 0.203692
Target:  5'- aCCGCGacaucgagcacuuucGCUGGCcGCGAGCGucuCGCg -3'
miRNA:   3'- -GGCGCgac------------CGACCGaCGCUCGUu--GCG- -5'
27583 3' -59.4 NC_005882.1 + 32284 0.69 0.230704
Target:  5'- aCCGCGCccauucGCUGGCgGUcAGCAcGCGCa -3'
miRNA:   3'- -GGCGCGac----CGACCGaCGcUCGU-UGCG- -5'
27583 3' -59.4 NC_005882.1 + 14972 0.69 0.236828
Target:  5'- aUGCGCUGGUagagcccguccUGGaCUGCGucGGCgAACGUg -3'
miRNA:   3'- gGCGCGACCG-----------ACC-GACGC--UCG-UUGCG- -5'
27583 3' -59.4 NC_005882.1 + 14737 0.69 0.262693
Target:  5'- gCCGCGCaGGUUGGaCgggcGCGAcgacagugccGUGACGCg -3'
miRNA:   3'- -GGCGCGaCCGACC-Ga---CGCU----------CGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 34853 0.67 0.316515
Target:  5'- gCCGCauagccggcgggcauGUUGGCgccGCUGUacacguucgGAGCAACGCu -3'
miRNA:   3'- -GGCG---------------CGACCGac-CGACG---------CUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 12809 0.67 0.310315
Target:  5'- gCGCGUgccgGGCUucucGGCgaacaggucgccgGCGAGCGccgccGCGCg -3'
miRNA:   3'- gGCGCGa---CCGA----CCGa------------CGCUCGU-----UGCG- -5'
27583 3' -59.4 NC_005882.1 + 8776 0.69 0.253388
Target:  5'- cCCGUGCcuguaucggaucgGGCaguUGGC-GaCGAGCAGCGCc -3'
miRNA:   3'- -GGCGCGa------------CCG---ACCGaC-GCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 2100 0.84 0.01965
Target:  5'- uCCGCGCUGGCUGGaggcaaUGCGAGCcaucGGCGa -3'
miRNA:   3'- -GGCGCGACCGACCg-----ACGCUCG----UUGCg -5'
27583 3' -59.4 NC_005882.1 + 30065 0.67 0.313403
Target:  5'- gCCGCcuuuGCcGGcCUGGacgGCGAGCGccgaGCGCu -3'
miRNA:   3'- -GGCG----CGaCC-GACCga-CGCUCGU----UGCG- -5'
27583 3' -59.4 NC_005882.1 + 22450 0.74 0.100239
Target:  5'- aCgGCGCUgcGGCcGGCUucagguagcccaucGCGAGCAGCGUc -3'
miRNA:   3'- -GgCGCGA--CCGaCCGA--------------CGCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 10679 0.69 0.249484
Target:  5'- cCCGUGUcGGCagcGGCggagGCGgcGGCAGCGUg -3'
miRNA:   3'- -GGCGCGaCCGa--CCGa---CGC--UCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 19271 0.67 0.313403
Target:  5'- gUCGCGCaGGCccuugagGGCcgGCG-GCuGCGCa -3'
miRNA:   3'- -GGCGCGaCCGa------CCGa-CGCuCGuUGCG- -5'
27583 3' -59.4 NC_005882.1 + 32352 0.67 0.329192
Target:  5'- gCCaGCGCUGGC-GGCaa-GAGCAGaucaGCc -3'
miRNA:   3'- -GG-CGCGACCGaCCGacgCUCGUUg---CG- -5'
27583 3' -59.4 NC_005882.1 + 11991 0.72 0.158265
Target:  5'- uUGCGCggccacgGGCgcGGCggcGcCGAGCAACGCg -3'
miRNA:   3'- gGCGCGa------CCGa-CCGa--C-GCUCGUUGCG- -5'
27583 3' -59.4 NC_005882.1 + 32204 0.7 0.207534
Target:  5'- gCGCGaCUGaGCUGGC-GCGGGaCGAuauCGCg -3'
miRNA:   3'- gGCGC-GAC-CGACCGaCGCUC-GUU---GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.