miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27583 5' -56.1 NC_005882.1 + 25182 0.66 0.552657
Target:  5'- -gGCUUCGCCUUccucGGGCcGGCCGuCGu -3'
miRNA:   3'- gaCGAAGCGGGGu---CCUGuUCGGUuGC- -5'
27583 5' -56.1 NC_005882.1 + 14994 0.66 0.530614
Target:  5'- -gGCUUCGCCCUuGcGCAGGCaaauGCGc -3'
miRNA:   3'- gaCGAAGCGGGGuCcUGUUCGgu--UGC- -5'
27583 5' -56.1 NC_005882.1 + 28321 0.66 0.52952
Target:  5'- cCUGCgcgGCCgCCGGcGGCAccuugggcuguacGGCCGGCGg -3'
miRNA:   3'- -GACGaagCGG-GGUC-CUGU-------------UCGGUUGC- -5'
27583 5' -56.1 NC_005882.1 + 14884 0.66 0.519711
Target:  5'- cCUGCaucgcaucacgUUCGCCgacgcaguCCAGGACGGGCucuacCAGCGc -3'
miRNA:   3'- -GACG-----------AAGCGG--------GGUCCUGUUCG-----GUUGC- -5'
27583 5' -56.1 NC_005882.1 + 6084 0.66 0.519711
Target:  5'- aCUGCUcgcaccgGCCCCAGugacugaacuGGCAAGCCuGCa -3'
miRNA:   3'- -GACGAag-----CGGGGUC----------CUGUUCGGuUGc -5'
27583 5' -56.1 NC_005882.1 + 10005 0.66 0.508898
Target:  5'- -cGCUUgGCaCCGGcGCGAGCCAAUa -3'
miRNA:   3'- gaCGAAgCGgGGUCcUGUUCGGUUGc -5'
27583 5' -56.1 NC_005882.1 + 6607 0.68 0.426316
Target:  5'- aCUGgaUUUGCCCgAGGACGccAGCCAugaagucgucguGCGg -3'
miRNA:   3'- -GACg-AAGCGGGgUCCUGU--UCGGU------------UGC- -5'
27583 5' -56.1 NC_005882.1 + 27090 0.68 0.426316
Target:  5'- gCUGC-UCG-CCCAGGGCGggaugcugcuGGCCcGCGu -3'
miRNA:   3'- -GACGaAGCgGGGUCCUGU----------UCGGuUGC- -5'
27583 5' -56.1 NC_005882.1 + 23222 0.68 0.388114
Target:  5'- -cGCgcaggCGCUggCCGGGcGCGGGCCGGCGg -3'
miRNA:   3'- gaCGaa---GCGG--GGUCC-UGUUCGGUUGC- -5'
27583 5' -56.1 NC_005882.1 + 27940 0.7 0.302946
Target:  5'- -cGCg-CGCUgCAGGGCAAGCCG-CGg -3'
miRNA:   3'- gaCGaaGCGGgGUCCUGUUCGGUuGC- -5'
27583 5' -56.1 NC_005882.1 + 574 0.71 0.28774
Target:  5'- uCUGUc-CGCCCCAGuGGCcGGCCAuGCGg -3'
miRNA:   3'- -GACGaaGCGGGGUC-CUGuUCGGU-UGC- -5'
27583 5' -56.1 NC_005882.1 + 27176 0.72 0.226708
Target:  5'- -aGCUggcCG-CCCAGGACGcgGGCCAGCa -3'
miRNA:   3'- gaCGAa--GCgGGGUCCUGU--UCGGUUGc -5'
27583 5' -56.1 NC_005882.1 + 14478 1.08 0.00054
Target:  5'- gCUGCUUCGCCCCAGGACAAGCCAACGc -3'
miRNA:   3'- -GACGAAGCGGGGUCCUGUUCGGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.