miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27584 3' -53.9 NC_005882.1 + 2700 0.66 0.697317
Target:  5'- -aUGagCGACGCCGUCGUuaucGCcaUCGGAAu -3'
miRNA:   3'- caACa-GCUGCGGCAGCA----CGc-AGCUUU- -5'
27584 3' -53.9 NC_005882.1 + 7693 0.66 0.686029
Target:  5'- -cUGUCGagGCGCuCG-CGggcgGCGUCGAGg -3'
miRNA:   3'- caACAGC--UGCG-GCaGCa---CGCAGCUUu -5'
27584 3' -53.9 NC_005882.1 + 23432 0.66 0.674685
Target:  5'- --cGUCGGCGUCa-CGgGCGUCGAGc -3'
miRNA:   3'- caaCAGCUGCGGcaGCaCGCAGCUUu -5'
27584 3' -53.9 NC_005882.1 + 32868 0.66 0.651879
Target:  5'- -gUGggCGGCGCCGUUGUaGCGcaUCGGc- -3'
miRNA:   3'- caACa-GCUGCGGCAGCA-CGC--AGCUuu -5'
27584 3' -53.9 NC_005882.1 + 24979 0.67 0.633573
Target:  5'- --gGUCGACGCCGcggagCGggaaaucaagcggcGCGUCGAc- -3'
miRNA:   3'- caaCAGCUGCGGCa----GCa-------------CGCAGCUuu -5'
27584 3' -53.9 NC_005882.1 + 6325 0.67 0.61755
Target:  5'- -gUGUCGACGCCGgucaaagcUCGUugacgcGCGaCGAAGc -3'
miRNA:   3'- caACAGCUGCGGC--------AGCA------CGCaGCUUU- -5'
27584 3' -53.9 NC_005882.1 + 4874 0.67 0.60612
Target:  5'- -cUGUCGAaGCUGcCG-GCGUCGAc- -3'
miRNA:   3'- caACAGCUgCGGCaGCaCGCAGCUuu -5'
27584 3' -53.9 NC_005882.1 + 32412 0.68 0.527324
Target:  5'- -aUGUCGAUGuuGUCGagGCGcUCGGc- -3'
miRNA:   3'- caACAGCUGCggCAGCa-CGC-AGCUuu -5'
27584 3' -53.9 NC_005882.1 + 3267 0.69 0.494678
Target:  5'- --cGUCGGCcggccGCCGUCGcGCGgCGAGAu -3'
miRNA:   3'- caaCAGCUG-----CGGCAGCaCGCaGCUUU- -5'
27584 3' -53.9 NC_005882.1 + 13735 0.7 0.412655
Target:  5'- -aUGUCGACGCCGUaGcGCGU-GAGAu -3'
miRNA:   3'- caACAGCUGCGGCAgCaCGCAgCUUU- -5'
27584 3' -53.9 NC_005882.1 + 19878 0.71 0.374913
Target:  5'- -gUGUCGGCGcCCGUCGU-CGUCa--- -3'
miRNA:   3'- caACAGCUGC-GGCAGCAcGCAGcuuu -5'
27584 3' -53.9 NC_005882.1 + 26294 0.71 0.365849
Target:  5'- --aGUCGACGCCGgccuucUUGUagGCGUCGAu- -3'
miRNA:   3'- caaCAGCUGCGGC------AGCA--CGCAGCUuu -5'
27584 3' -53.9 NC_005882.1 + 10592 0.75 0.216859
Target:  5'- --aGUCGACGCUGUCacGCGUCGGc- -3'
miRNA:   3'- caaCAGCUGCGGCAGcaCGCAGCUuu -5'
27584 3' -53.9 NC_005882.1 + 3618 0.77 0.163957
Target:  5'- --cGUCGACGCCG-CuUGCGUCGAu- -3'
miRNA:   3'- caaCAGCUGCGGCaGcACGCAGCUuu -5'
27584 3' -53.9 NC_005882.1 + 14869 1.06 0.001311
Target:  5'- cGUUGUCGACGCCGUCGUGCGUCGAAAu -3'
miRNA:   3'- -CAACAGCUGCGGCAGCACGCAGCUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.