miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27584 5' -59.3 NC_005882.1 + 25404 0.66 0.391899
Target:  5'- gGCCUcGGCCGCgUCGCcgacgAGCuGCGCg -3'
miRNA:   3'- -UGGA-CUGGCGgGGUGuag--UCGuCGCG- -5'
27584 5' -59.3 NC_005882.1 + 21156 0.66 0.382832
Target:  5'- cGCC-GAgCGCCuUCGCGcCGGCuGCGCa -3'
miRNA:   3'- -UGGaCUgGCGG-GGUGUaGUCGuCGCG- -5'
27584 5' -59.3 NC_005882.1 + 11901 0.66 0.382832
Target:  5'- uCCUGAUCGCCUUuguCGUCGcguuGCucGGCGCc -3'
miRNA:   3'- uGGACUGGCGGGGu--GUAGU----CG--UCGCG- -5'
27584 5' -59.3 NC_005882.1 + 28268 0.66 0.377459
Target:  5'- cGCCggcGGCCGCgCaggcggucuccagcgUCACAUCGGCGGUGg -3'
miRNA:   3'- -UGGa--CUGGCG-G---------------GGUGUAGUCGUCGCg -5'
27584 5' -59.3 NC_005882.1 + 18335 0.66 0.373906
Target:  5'- -gCUGACCGCggCCGCGUC-GCGuCGCa -3'
miRNA:   3'- ugGACUGGCGg-GGUGUAGuCGUcGCG- -5'
27584 5' -59.3 NC_005882.1 + 27609 0.66 0.373906
Target:  5'- gGCC--GCgGCCgCgGCGUCccuGCAGCGCa -3'
miRNA:   3'- -UGGacUGgCGG-GgUGUAGu--CGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 573 0.66 0.364251
Target:  5'- uUCUGuCCGCCCCaguggccggccauGCgGUCGGCAaucucGCGCc -3'
miRNA:   3'- uGGACuGGCGGGG-------------UG-UAGUCGU-----CGCG- -5'
27584 5' -59.3 NC_005882.1 + 24253 0.66 0.35992
Target:  5'- uACCUGACCGUgauguucaagaagaaCCCGC-UCGGUA-CGUa -3'
miRNA:   3'- -UGGACUGGCG---------------GGGUGuAGUCGUcGCG- -5'
27584 5' -59.3 NC_005882.1 + 23292 0.66 0.356482
Target:  5'- uGCCc-GCCGgCCCGCGccCGGCcAGCGCc -3'
miRNA:   3'- -UGGacUGGCgGGGUGUa-GUCG-UCGCG- -5'
27584 5' -59.3 NC_005882.1 + 26724 0.66 0.355626
Target:  5'- gGCgUGACCGUguucaucaggUCCgugagcgACggCAGCAGCGCg -3'
miRNA:   3'- -UGgACUGGCG----------GGG-------UGuaGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 19059 0.66 0.355626
Target:  5'- ---cGACCcaGCCCCACGcCGGCGcguugucGCGCg -3'
miRNA:   3'- uggaCUGG--CGGGGUGUaGUCGU-------CGCG- -5'
27584 5' -59.3 NC_005882.1 + 12041 0.66 0.347986
Target:  5'- ---cGugCGUUgCGCGUCAGCucGGCGCg -3'
miRNA:   3'- uggaCugGCGGgGUGUAGUCG--UCGCG- -5'
27584 5' -59.3 NC_005882.1 + 25737 0.66 0.347144
Target:  5'- aACCUGACCcgugaugaagaGUUCCGgAUCGGCGagacgauGCGCc -3'
miRNA:   3'- -UGGACUGG-----------CGGGGUgUAGUCGU-------CGCG- -5'
27584 5' -59.3 NC_005882.1 + 22622 0.67 0.331432
Target:  5'- cGCCggugcagucGCUGUCCgACGUCGacGCGGCGCa -3'
miRNA:   3'- -UGGac-------UGGCGGGgUGUAGU--CGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 30889 0.67 0.323375
Target:  5'- cGCCUGAUucucgggaCGCCCCAgGgCAGCGaucCGCa -3'
miRNA:   3'- -UGGACUG--------GCGGGGUgUaGUCGUc--GCG- -5'
27584 5' -59.3 NC_005882.1 + 12591 0.67 0.323375
Target:  5'- cGCC-GGCCGCCgCCGCGaCacacuGGCcGCGCg -3'
miRNA:   3'- -UGGaCUGGCGG-GGUGUaG-----UCGuCGCG- -5'
27584 5' -59.3 NC_005882.1 + 16073 0.67 0.323375
Target:  5'- ---cGGCCGCCUUg---CGGCGGCGCa -3'
miRNA:   3'- uggaCUGGCGGGGuguaGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 28644 0.67 0.315465
Target:  5'- gGCCgcgGGCCaGCUCUcgACGgcgAGCAGCGCg -3'
miRNA:   3'- -UGGa--CUGG-CGGGG--UGUag-UCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 24427 0.67 0.315465
Target:  5'- -gCUGAcuuCCGCgCCaACAUCGGCGGCu- -3'
miRNA:   3'- ugGACU---GGCGgGG-UGUAGUCGUCGcg -5'
27584 5' -59.3 NC_005882.1 + 13714 0.67 0.315465
Target:  5'- ---aGAUCGCCCCAC--CAGCGGC-Cg -3'
miRNA:   3'- uggaCUGGCGGGGUGuaGUCGUCGcG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.