miRNA display CGI


Results 21 - 40 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27584 5' -59.3 NC_005882.1 + 28644 0.67 0.315465
Target:  5'- gGCCgcgGGCCaGCUCUcgACGgcgAGCAGCGCg -3'
miRNA:   3'- -UGGa--CUGG-CGGGG--UGUag-UCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 30590 0.67 0.307702
Target:  5'- ---cGACCGUCaCCuuGUCGGCcGCGCg -3'
miRNA:   3'- uggaCUGGCGG-GGugUAGUCGuCGCG- -5'
27584 5' -59.3 NC_005882.1 + 10346 0.68 0.292615
Target:  5'- uGCC-GACCGCguacguuuucCCCGCAUacuGGCAGcCGCc -3'
miRNA:   3'- -UGGaCUGGCG----------GGGUGUAg--UCGUC-GCG- -5'
27584 5' -59.3 NC_005882.1 + 21051 0.68 0.27108
Target:  5'- gGCCUGaACCGCuUCCAguuCGUCGGCuucgaugguGGCGUg -3'
miRNA:   3'- -UGGAC-UGGCG-GGGU---GUAGUCG---------UCGCG- -5'
27584 5' -59.3 NC_005882.1 + 23340 0.68 0.27108
Target:  5'- cGCCUGgaGCCGCuCUCAUcgCGuGCGGCGg -3'
miRNA:   3'- -UGGAC--UGGCG-GGGUGuaGU-CGUCGCg -5'
27584 5' -59.3 NC_005882.1 + 28001 0.68 0.27108
Target:  5'- aGCCgcGGCuUGCCCUg---CAGCAGCGCg -3'
miRNA:   3'- -UGGa-CUG-GCGGGGuguaGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 19403 0.68 0.257443
Target:  5'- gACCUGAUCagccguGUCCCggccgaauuGCGUCAGCAGC-Ca -3'
miRNA:   3'- -UGGACUGG------CGGGG---------UGUAGUCGUCGcG- -5'
27584 5' -59.3 NC_005882.1 + 32128 0.68 0.257443
Target:  5'- gGCCUGGggcgcgauaUCGUCCCGCGccagcUCAGUcGCGCc -3'
miRNA:   3'- -UGGACU---------GGCGGGGUGU-----AGUCGuCGCG- -5'
27584 5' -59.3 NC_005882.1 + 32293 0.69 0.244372
Target:  5'- cACCcGuacACCGCgCCCAUucgcuggcgGUCAGCAcGCGCa -3'
miRNA:   3'- -UGGaC---UGGCG-GGGUG---------UAGUCGU-CGCG- -5'
27584 5' -59.3 NC_005882.1 + 15386 0.7 0.214102
Target:  5'- uGCUUGAUCgGCuCCCGCGcuUCacgGGCGGCGCc -3'
miRNA:   3'- -UGGACUGG-CG-GGGUGU--AG---UCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 21342 0.7 0.197526
Target:  5'- cGCC-GGCCGCCgucgCCGCAUCG--AGCGCg -3'
miRNA:   3'- -UGGaCUGGCGG----GGUGUAGUcgUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 4847 0.7 0.197526
Target:  5'- gAUCUGcuuuGCCGCCUCgaucaGCGagAGCGGCGCg -3'
miRNA:   3'- -UGGAC----UGGCGGGG-----UGUagUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 27175 0.71 0.172387
Target:  5'- -gCUGGCCGCCCaggaCGCGggcCAGCAGCa- -3'
miRNA:   3'- ugGACUGGCGGG----GUGUa--GUCGUCGcg -5'
27584 5' -59.3 NC_005882.1 + 25089 0.71 0.172387
Target:  5'- cGCCgGGCCGCCUgACAUCAGgAuUGCu -3'
miRNA:   3'- -UGGaCUGGCGGGgUGUAGUCgUcGCG- -5'
27584 5' -59.3 NC_005882.1 + 15743 0.71 0.163156
Target:  5'- gACCggUGACCGCCaaGUcgCGGCGGCGCc -3'
miRNA:   3'- -UGG--ACUGGCGGggUGuaGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 19492 0.72 0.141999
Target:  5'- -gUUG-CCGCCCCGCGUuCGGCGaauGCGCu -3'
miRNA:   3'- ugGACuGGCGGGGUGUA-GUCGU---CGCG- -5'
27584 5' -59.3 NC_005882.1 + 3863 0.72 0.141999
Target:  5'- uGCUUGAgCGUCgCG-AUCGGCAGCGCg -3'
miRNA:   3'- -UGGACUgGCGGgGUgUAGUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 32597 0.75 0.095195
Target:  5'- cUCUGACCGCCCaggGCGUgcccuugUAGCGGUGCa -3'
miRNA:   3'- uGGACUGGCGGGg--UGUA-------GUCGUCGCG- -5'
27584 5' -59.3 NC_005882.1 + 31954 0.75 0.092764
Target:  5'- aACCUGACCGaCgaGCGUCGGCGGcCGCu -3'
miRNA:   3'- -UGGACUGGCgGggUGUAGUCGUC-GCG- -5'
27584 5' -59.3 NC_005882.1 + 14835 1.1 0.000187
Target:  5'- aACCUGACCGCCCCACAUCAGCAGCGCc -3'
miRNA:   3'- -UGGACUGGCGGGGUGUAGUCGUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.